PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022992027.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 229aa MW: 26058.7 Da PI: 9.6235

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022992027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.7	2e-08	57	78	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+r C yGd+C++ H XP_022992027.1 57 KACRQFQRRRKCAYGDQCRYLH 78 67******************** PP
2	zf-CCCH	25.1	3e-08	138	161	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC ++tG C+yG+ C+ aH XP_022992027.1 138 KTRLCYPLQKTGSCPYGAVCRIAH 161 8*******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MPSKSRIPPS NNRNIGYDHE LGCMSTPALN DTHRRLPSLR GIEFHEGQLS GRSNEMKACR 60 QFQRRRKCAY GDQCRYLHEI PEKTRDFGST TQNYEVRIVD SGHVMNRRRG LDQLEEVRSK 120 VQTEIVVRGE IPKPVRCKTR LCYPLQKTGS CPYGAVCRIA HEEAELQKLG PFIAASQRGS 180 VSDASATTSA ATQVEIGIVC KNEEPRMKQF FKSKKSKRLI AIYADWLED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-15	C3H family protein