PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022988920.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SRS

Protein Properties

Length: 505aa MW: 55101.6 Da PI: 10.2336

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022988920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	97.6	2.5e-30	115	204	7	94
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssa 94 C+dCGn+akk+C+++RCRtCCk rg +C+thvkstWvpa++rrerq + ++ s+ ++a +kr++ l ++++a++++ +++ XP_022988920.1 115 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSgsSSAGAKRPKVLIPSQTAAAAAAAAATE 204 6*********************************************98776655444444433777788888775444444333332222 PP
2	trihelix	48.8	1.9e-15	226	308	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v++++ ++ f++spk qCk+k+e+++kry+ + +++ + ++p++++l+ XP_022988920.1 226 EWSEGAVSTLLEAYESKWVLRNRAKLKGHDWEDVARHVsSRADFTKSPKtqtQCKNKIESMKKRYRSESASAAS-------SWPLYHRLH 308 5***********************************756667766543339***********999997.......4999996 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MLGLRDVLFI APTPSSLHQH TQIISSDHHP SLPLPSSTAL GVSVGIFPLL AATPCLQPPP 60 NQMPDEVSDR CRSLENLKRT QDFGFGKGDS LIGGGGNHGY DDQVKGDGGD GSLGVCRDCG 120 NRAKKECEYR RCRTCCKGRG NHCSTHVKST WVPASRRRER QMLVVMDGVA TSGSSGSSSA 180 GAKRPKVLIP SQTAAAAAAA AATETPSPKK TPASTTGAGD RLKRDEWSEG AVSTLLEAYE 240 SKWVLRNRAK LKGHDWEDVA RHVSSRADFT KSPKTQTQCK NKIESMKKRY RSESASAASS 300 WPLYHRLHLL LRGNTLTPPP PPPTPVILLD PPPPPPAPPP FLPAQNSHGS NGVDRINPKE 360 DGVDNGRRNE SDELSERSKK MVIETDSSTP AIVYSDKDKV SMRPKQQTKM KNSKKKNKST 420 RLSSEDSLEQ IAGSIRWLAK VVVRSEQARM EMIKDIEKMR AEAEAKRGEM DLKRTQIIAN 480 TQLEIAKLFA SATKPIDSSL RIGRT

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MLGLRDVLFI APTPSSLHQH TQIISSDHHP SLPLPSSTAL GVSVGIFPLL AATPCLQPPP  60
NQMPDEVSDR CRSLENLKRT QDFGFGKGDS LIGGGGNHGY DDQVKGDGGD GSLGVCRDCG  120
NRAKKECEYR RCRTCCKGRG NHCSTHVKST WVPASRRRER QMLVVMDGVA TSGSSGSSSA  180
GAKRPKVLIP SQTAAAAAAA AATETPSPKK TPASTTGAGD RLKRDEWSEG AVSTLLEAYE  240
SKWVLRNRAK LKGHDWEDVA RHVSSRADFT KSPKTQTQCK NKIESMKKRY RSESASAASS  300
WPLYHRLHLL LRGNTLTPPP PPPTPVILLD PPPPPPAPPP FLPAQNSHGS NGVDRINPKE  360
DGVDNGRRNE SDELSERSKK MVIETDSSTP AIVYSDKDKV SMRPKQQTKM KNSKKKNKST  420
RLSSEDSLEQ IAGSIRWLAK VVVRSEQARM EMIKDIEKMR AEAEAKRGEM DLKRTQIIAN  480
TQLEIAKLFA SATKPIDSSL RIGRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-84	Trihelix family protein