PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022987710.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HRT-like

Protein Properties

Length: 467aa MW: 52408.7 Da PI: 9.9319

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022987710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	50.3	4.1e-16	268	297	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ++ G vC+++Pv+gRKRC+eHKGm++ XP_022987710.1 268 CGVVIGYGVVCRKPPVEGRKRCAEHKGMKV 297 ****************************97 PP
2	HRT-like	62.9	4.5e-20	345	375	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+ l dGs+C+r+Pv+gRKRCeeHKG+Ri XP_022987710.1 345 ICGIVLYDGSPCRRTPVQGRKRCEEHKGQRI 375 8*****************************7 PP
3	HRT-like	53.4	4.3e-17	430	459	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l++G C+rqPvkgR RC eHKGmRi XP_022987710.1 430 CGVDLGNGLYCTRQPVKGRVRCGEHKGMRI 459 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MVAEFSSTRL KRENCKRTKH DSNFSKWEIL VAPSDWEDYS LGKEGAERYR IHNLPKVSGP 60 GLYELGIAVS SSGLGREIAK LDADWIVVVY IGEADNVRTR LQHYGRSGSH LGNGYLCFVD 120 CKVIPLEKGP GLFQEMFTRG YSILYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR 180 HNDVLKKLED IASQTKKFTI ITRKLLPFRQ KQMGIKIKTS KPIPTENKTG EYGEERSSFF 240 SRILHFSRSR PRLVVNTDDV SGADSSSCGV VIGYGVVCRK PPVEGRKRCA EHKGMKVNGL 300 LKNSYAGATI YGDTDFSGSN AETSYNTEEL SVQDSFPNKG NFLPICGIVL YDGSPCRRTP 360 VQGRKRCEEH KGQRIRRSTL TSCQEAKPKV LLDVITSQYK QQTSPTSKQE SILIAQDNSP 420 DLNSSLERKC GVDLGNGLYC TRQPVKGRVR CGEHKGMRIN GLISRKH

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MVAEFSSTRL KRENCKRTKH DSNFSKWEIL VAPSDWEDYS LGKEGAERYR IHNLPKVSGP  60
GLYELGIAVS SSGLGREIAK LDADWIVVVY IGEADNVRTR LQHYGRSGSH LGNGYLCFVD  120
CKVIPLEKGP GLFQEMFTRG YSILYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR  180
HNDVLKKLED IASQTKKFTI ITRKLLPFRQ KQMGIKIKTS KPIPTENKTG EYGEERSSFF  240
SRILHFSRSR PRLVVNTDDV SGADSSSCGV VIGYGVVCRK PPVEGRKRCA EHKGMKVNGL  300
LKNSYAGATI YGDTDFSGSN AETSYNTEEL SVQDSFPNKG NFLPICGIVL YDGSPCRRTP  360
VQGRKRCEEH KGQRIRRSTL TSCQEAKPKV LLDVITSQYK QQTSPTSKQE SILIAQDNSP  420
DLNSSLERKC GVDLGNGLYC TRQPVKGRVR CGEHKGMRIN GLISRKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-110	HRT-like family protein