PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022986792.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 668aa MW: 73331.6 Da PI: 5.6586

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022986792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	273	294	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ f++ GtC+ Gd C +aHg XP_022986792.1 273 VLCPEFRK-GTCRQGDACEYAHG 294 59****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MCCNSKSVSP NFVMNGGFKQ GNLGVCLSVL LEFSATDDLI GFRSAVEEHG YDIDEASLWY 60 GRSIGSKKMR YEERTPLMVA AMFGSLNVLS YIVHRGCVDV NRACGSDGPT ALHCAVAGGS 120 AVSDQVVELL LDASADASAV DANGNQPGDL IGRDFSLASY SRRKVLQQLL NGWEEDGLGS 180 SEAIFYEMET LEPVEASSSW AARDGMEKKE YRVDLSLPDI KNEMYSTDEF RMYTFKIKPC 240 TRAYSHDWTE CPFVHPGENA RRRDLRKYHY SCVLCPEFRK GTCRQGDACE YAHGIFECWL 300 HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPLYASTGSA VPSPRSICGS SLDMAAIRSL 360 TLGSPSALMP SSSTPPLTPP TGVSSPMGGT MWQTQPPTLQ LPGSRLKAYL NARDVDLDVE 420 LLCLESQRHR QKQLIDEISC LPSPSRWNNG LSTTAPFPSP RSRNGELNGL GGMKPTNLEE 480 FFGSVDPAML PQLQGLSLDS MGTQVQSPSG IQMRQSLNQS FLSSYANSIG SPPARSSQPS 540 VSAAANVLSP RGALFTNRSQ SFIEQNAMPS NLSDWGSPNG KLDWGIHGEE LIKLRKSASY 600 GFQGSSLATP TMHATAPEPD VSWVQSLVKD TSSENSVQLS MEQQKQQLWH LDNSDLKQMY 660 MEQEQLVA

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MCCNSKSVSP NFVMNGGFKQ GNLGVCLSVL LEFSATDDLI GFRSAVEEHG YDIDEASLWY  60
GRSIGSKKMR YEERTPLMVA AMFGSLNVLS YIVHRGCVDV NRACGSDGPT ALHCAVAGGS  120
AVSDQVVELL LDASADASAV DANGNQPGDL IGRDFSLASY SRRKVLQQLL NGWEEDGLGS  180
SEAIFYEMET LEPVEASSSW AARDGMEKKE YRVDLSLPDI KNEMYSTDEF RMYTFKIKPC  240
TRAYSHDWTE CPFVHPGENA RRRDLRKYHY SCVLCPEFRK GTCRQGDACE YAHGIFECWL  300
HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPLYASTGSA VPSPRSICGS SLDMAAIRSL  360
TLGSPSALMP SSSTPPLTPP TGVSSPMGGT MWQTQPPTLQ LPGSRLKAYL NARDVDLDVE  420
LLCLESQRHR QKQLIDEISC LPSPSRWNNG LSTTAPFPSP RSRNGELNGL GGMKPTNLEE  480
FFGSVDPAML PQLQGLSLDS MGTQVQSPSG IQMRQSLNQS FLSSYANSIG SPPARSSQPS  540
VSAAANVLSP RGALFTNRSQ SFIEQNAMPS NLSDWGSPNG KLDWGIHGEE LIKLRKSASY  600
GFQGSSLATP TMHATAPEPD VSWVQSLVKD TSSENSVQLS MEQQKQQLWH LDNSDLKQMY  660
MEQEQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-174	C3H family protein