PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022985614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 91932.5 Da PI: 5.9646 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 26 | 83 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_022985614.1 26 YVRYTSEQVEALERVYAECPKPSSLRRQQLVRECpilsNIEPKQIKVWFQNRRCREKQ 83 5789****************************************************97 PP | |||||||
2 | START | 155 | 6.2e-49 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++ g a+ra+g+v ++ +e+l+d++ W +++++ e+ g g+++l XP_022985614.1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLESS-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELV 258 7899******************************************************.7777777777***********999999999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++ +a+++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s +++v+h +l+++ ++++lr+l+ XP_022985614.1 259 YTQVYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLY 353 **************************************99999988999********************************************** PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + ++k++ a+l++ + XP_022985614.1 354 ESSKVVAQKMTIAALRYIR 372 **************99865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 842 aa Download sequence |
MAMAIAQHRE SSSGSITRHL DSTGKYVRYT SEQVEALERV YAECPKPSSL RRQQLVRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLNAM NKLLMEENDR LQKQVSQLVC 120 ENGFMRQQLQ TVPAAATTDA SCDSVVTTPQ PSRRDANNAA GLLSIAEETL AEFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQSCGGVA ARACGLVSLE SSKIAEILKD RPSWFRDCRS 240 LEVFTMFPAG NGGTIELVYT QVYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGSGA 300 GPSAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWNVPEVLR PLYESSKVVA 360 QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAVNG FNDNGWSLIN 420 CEGAEDVVLA VNSTKNFGTT SNPANSLTYP GGVLCAKASM LLQNVSPAVL VRFLREHRSE 480 WADFNIDAYS AATLKANSYA YPGMRPTRFT GSQIIMPLGH TIENEELLEV IRLEGHPMVQ 540 EDAFVSRDIH LLQICSGIDE NAVGACSELI FAPIDEMFPD DAPLLPSGFR IIPLDSRSSD 600 AKGSQRTLDL TSSLEVGCGT SNAAGDASSS PSSRSVLTIA FQFPFESSMQ DNVTNMAHQY 660 VRSVISSVQR VAMAISPSGG SPALGPKLSP GSPEALTLAH WICKSYSFQL GSELIRSDSL 720 ESDSVLKNLW NHQDAILCCS LKQALPVFLF ANQSGLDMLE TTLVALQDIT LDKIFDESGR 780 KALCSDFPKL MQQGFAYLPG GICASTMGRH VSYEQAIAWK VLEADETTVH CLAFSFINWS 840 FV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |