PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022984238.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24561.1 Da    PI: 9.2235
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022984238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.8e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr g++KKA+EL +LCda++a+i+fs +gkl++yss
  XP_022984238.1  9 KKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSS 59
                    689**********************************************96 PP
2K-box51.34.9e-18791691099
           K-box  10 eeakaeslqqe.lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ +++++++   a+L++e     +e+Rh++Ge+L++L ++eL++Le+ Le +l+++ ++K+e +l++i+  ++ke  l +en++Lr+++ 
  XP_022984238.1  79 CQPQYQQMEKSvCANLREEFAAKTKELRHMKGEELQELGIEELKKLEKLLEIGLNRVLETKDEKFLKEIDAVKEKEALLMKENQRLRNQVR 169
                     455566555541699************************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTRQKIQIKK IDNIAARQVT FSKRRRGLFK KAHELATLCD ADIALIVFSA SGKLFDYSSS  60
SMHELLGRHN KLPEVNNFCQ PQYQQMEKSV CANLREEFAA KTKELRHMKG EELQELGIEE  120
LKKLEKLLEI GLNRVLETKD EKFLKEIDAV KEKEALLMKE NQRLRNQVRA LNRDQQEQQA  180
VGVGGSSLGS KSITSNSSSS PNPSSQDCDD ISLKLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-43MIKC_MADS family protein