PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022979901.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 272aa    MW: 31156 Da    PI: 7.0771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022979901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd ll ++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_022979901.1 14 KGRWTAEEDHLLTNYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.65.8e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE++++v++++ lG++ W+ Ia +++ gRt++++k++w+++l
   XP_022979901.1  67 RGNITPEEEQKIVKLHNVLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGRSPCCEKV GLRKGRWTAE EDHLLTNYIR ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTNLKRGNI TPEEEQKIVK LHNVLGNRWS VIAGHLPGRT DNEIKNYWNS HLSRRIYTVT  120
RPSATKSSSP ITCLLGIIPV PKRKRDVTYG RREEQGGIVK GKEEDDKEDG KTLGKEVVLR  180
SIMGDGDGES LGPYEWVDGE IMTLNNGMVK ASGNQCMDED HGNGYCSSTP FEKDQWLNWE  240
WEEYGSIHEG RFEKWELEEI SSWLRETDQI DL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-72MYB family protein