PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022979156.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 722aa MW: 80066.6 Da PI: 8.3445

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022979156.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	96	116	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f + G C++G++C+F+H+ XP_022979156.1 96 YCTDFVK-GRCHRGASCTFSHD 116 59***.***********6 PP
2	zf-CCCH	21.8	3.4e-07	157	178	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_022979156.1 157 VICKYFAA-GSCRNGKNCKYSHH 178 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MGRSRSRSWS RSPPHGNKRD SGFHDRNTNR TRVSTQLCRD FTSGRCRRGS GCQFLHQDDQ 60 NLDDSLENRN RKGARSFRST SHDFKDYPRS GRSAAYCTDF VKGRCHRGAS CTFSHDSAFH 120 ELSRDSPNDI SRDRKNERTK EAYFSRGERE PCSSSLVICK YFAAGSCRNG KNCKYSHHSQ 180 SRASPERKSS TDKLEHVQCS DGREQLWDGL KSSELASGSD FTQLIEDKKE QTANEEPRYT 240 WPSDQKCDHG LNNESKTRWD RAVDIKTVRS NKNDAIPSKA ENAGGCTGSS DPRGHRKWPS 300 DDMEMSPDWH YPVQPSNHVV KGDCNVMQDS GSQTSTALAI SHATVQEGLA KNQDIAIEPI 360 VVDITRFRKS HTLTKDDTIA SASNDNITID RTVTSHAEGN PSGNVVLGQR MAYHSDHPDG 420 TVTNPKISDG NFRVKLQKED ESMPGINSGT TVTPNIVTND QIRQITDLSA SLAQYFGNAQ 480 PLPQLYASLN TRSVSEAPSF PYSDAPMGAL GTSMKTGPVN ESSKQHDSAL CNSLQLKKLE 540 VTKTPQKSTT EVKGEVQIPN LPLSSGPCGI SAEETLHGKP TADGDAIKEK NGDGNNENKT 600 DPATNEDSQK IDTTENANGN DEVHDKKKSK DMKGIRAFKF ALVEFVKELL KPTWKEGHIS 660 KDVYKTIVKK VVDKVTGSLQ DGHIPQTQEK IDHYLSFSKS KLTKLVQVMH ILKIQLVATI 720 TF

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MGRSRSRSWS RSPPHGNKRD SGFHDRNTNR TRVSTQLCRD FTSGRCRRGS GCQFLHQDDQ  60
NLDDSLENRN RKGARSFRST SHDFKDYPRS GRSAAYCTDF VKGRCHRGAS CTFSHDSAFH  120
ELSRDSPNDI SRDRKNERTK EAYFSRGERE PCSSSLVICK YFAAGSCRNG KNCKYSHHSQ  180
SRASPERKSS TDKLEHVQCS DGREQLWDGL KSSELASGSD FTQLIEDKKE QTANEEPRYT  240
WPSDQKCDHG LNNESKTRWD RAVDIKTVRS NKNDAIPSKA ENAGGCTGSS DPRGHRKWPS  300
DDMEMSPDWH YPVQPSNHVV KGDCNVMQDS GSQTSTALAI SHATVQEGLA KNQDIAIEPI  360
VVDITRFRKS HTLTKDDTIA SASNDNITID RTVTSHAEGN PSGNVVLGQR MAYHSDHPDG  420
TVTNPKISDG NFRVKLQKED ESMPGINSGT TVTPNIVTND QIRQITDLSA SLAQYFGNAQ  480
PLPQLYASLN TRSVSEAPSF PYSDAPMGAL GTSMKTGPVN ESSKQHDSAL CNSLQLKKLE  540
VTKTPQKSTT EVKGEVQIPN LPLSSGPCGI SAEETLHGKP TADGDAIKEK NGDGNNENKT  600
DPATNEDSQK IDTTENANGN DEVHDKKKSK DMKGIRAFKF ALVEFVKELL KPTWKEGHIS  660
KDVYKTIVKK VVDKVTGSLQ DGHIPQTQEK IDHYLSFSKS KLTKLVQVMH ILKIQLVATI  720
TF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-09	C3H family protein