PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022975315.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1099aa MW: 122267 Da PI: 6.5397

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022975315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.1	3.4e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022975315.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9545444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_022975315.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	124	1.1e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_022975315.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence
MKAPPNGFLP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE 60 TDFIPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP 360 FYICPPPFFR PKFLKQPGMP DDESEIENAF KRAMPWFGDE FGMKDASSSI FPGLSLVQWM 420 SMQHNNQFPA AQSGILPSMV APSALHGTFT NDESSKLLSF QAPVMSSPNL QFSKANQQNQ 480 VAQLPPTTWS QQQQVQQLLQ VPASQQQQQQ LPLQQELQQQ VPQQQQLQMQ QPQRHQQTSQ 540 SALLNNSVTA PNHLPNQTLQ QPLVYSQLQQ QKLLAGNIQS HQTSQPSNKN LFQTTSLSQE 600 VQFQPQIEQQ PSLLPKHQQP TQVQQAPLQL MQQSLSQRAQ QQPQVQQFSQ PVPTEQQLQL 660 QLLQKLQQQQ QQQQHPLLSP ASPLLPPQLL QQQNVHQENQ QLPPLPLSNQ QQFNTSGGSL 720 QTEKHNSNGF SSLGLMQSQQ APITHSHNQF KPTMAIRAYS GLTDGDAPSC STSPSTNNCQ 780 VSASNMLNKN QQGAATLGGD PVAEPVTNLA QDLQSKPDLR IKHEFPSSKG LDQLKYKGTV 840 PDQLEACSSG TSYCLDAGTI QQTFPLPTCL DNDVQSHTRN NIPFSNSMDG LAPDTLLSRG 900 YDSQKDLQNL LSNYGGGVPR DIETELSTAA ISSQSFGVPN LPFKSDCSND VNVNEAGALS 960 SGLWANHSQR MRTYTKVQKR GSVGRCIDVT RYKGYDELRH DLARMFGIEG QLEDPQRTDW 1020 KLVYVDHETD ILLVGDDPWE EFVSCVQSIK ILSSAEVQQM SLDGNLGHIQ APNQACSGTD 1080 SGNAWRGQYD DNSAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence

MKAPPNGFLP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE  60
TDFIPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP  360
FYICPPPFFR PKFLKQPGMP DDESEIENAF KRAMPWFGDE FGMKDASSSI FPGLSLVQWM  420
SMQHNNQFPA AQSGILPSMV APSALHGTFT NDESSKLLSF QAPVMSSPNL QFSKANQQNQ  480
VAQLPPTTWS QQQQVQQLLQ VPASQQQQQQ LPLQQELQQQ VPQQQQLQMQ QPQRHQQTSQ  540
SALLNNSVTA PNHLPNQTLQ QPLVYSQLQQ QKLLAGNIQS HQTSQPSNKN LFQTTSLSQE  600
VQFQPQIEQQ PSLLPKHQQP TQVQQAPLQL MQQSLSQRAQ QQPQVQQFSQ PVPTEQQLQL  660
QLLQKLQQQQ QQQQHPLLSP ASPLLPPQLL QQQNVHQENQ QLPPLPLSNQ QQFNTSGGSL  720
QTEKHNSNGF SSLGLMQSQQ APITHSHNQF KPTMAIRAYS GLTDGDAPSC STSPSTNNCQ  780
VSASNMLNKN QQGAATLGGD PVAEPVTNLA QDLQSKPDLR IKHEFPSSKG LDQLKYKGTV  840
PDQLEACSSG TSYCLDAGTI QQTFPLPTCL DNDVQSHTRN NIPFSNSMDG LAPDTLLSRG  900
YDSQKDLQNL LSNYGGGVPR DIETELSTAA ISSQSFGVPN LPFKSDCSND VNVNEAGALS  960
SGLWANHSQR MRTYTKVQKR GSVGRCIDVT RYKGYDELRH DLARMFGIEG QLEDPQRTDW  1020
KLVYVDHETD ILLVGDDPWE EFVSCVQSIK ILSSAEVQQM SLDGNLGHIQ APNQACSGTD  1080
SGNAWRGQYD DNSAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein