PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022974742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | ARF | ||||||||
Protein Properties | Length: 913aa MW: 100518 Da PI: 5.2729 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.3 | 1.7e-24 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F +++ XP_022974742.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239 99*********************999*****954444.4.38************************************************..457 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++v+r+ XP_022974742.1 240 KSQLLIGVRRA 250 7778****997 PP | |||||||
2 | Auxin_resp | 111.6 | 7.9e-37 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k + +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ XP_022974742.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358 79*******************************9877*********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence |
MSSVEDKLKA PMGLINNTPQ TNLLDEMKLL KQMQDQTGAR KAINSELWHA CAGPLVSLPH 60 VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQSVTLHAD KDSDEIYAQM 120 SLQPVNSEKD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY 180 TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK 240 SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI 300 PLAKYRKCVF GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE 360 WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLAGETDWE SLVKRPMLRV 420 PENIRGDLSY AAPNLCSEPL MKMLLRPQLV SLHGATLHQD SANNLVKIQD MKDMQPETNS 480 KMKQLIPTET ASPGNQNPTQ SDPINPNSSP KESLPGKAHT SAATESEPPT GADDVSTNQS 540 NTLPPVGDCV GEKLTTKEVN MQTLVNQLSF MNQNQIPMQS WPLQPQLESL IQHPQPIDMP 600 HPEFTLDGDG CLINPSCLAL PGVMRSPGNL SMLALQESST VFPEALNFPL PSTGQDMWDP 660 LNNIRFSSNL NCMGNANVMR AVSDESNNQS GIYSCSNLEI SNGGNTLVGP AVSSTILDDY 720 CALKDADFPH PSDCLVGNFS SSQDVQSQIT SAASLGDSQA FSRQDFHDNS GGTSSCNVDF 780 DEGSLLHNGS WNQVVPPMRT YTKVQKAGSV GRSIDVTSFK NYDELCSAIE CMFGLEGLLN 840 DPRGSGWKLV YVDYENDVLL IGDDPWEEFV SCVRCIRILS PSEVKQMSEE GMKLLDSAMM 900 QGINCSMPEG GRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |