PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022974320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 41028.4 Da PI: 5.9198 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.8e-13 | 136 | 187 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +++l+P++ + ++ + a+i A++++k+L+ XP_022974320.1 136 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YIQRGDQASIIGGAIDFVKELE 187 79****************************...9******************995 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence |
MERLQGPINP SFYGGCSDMG CSKQQFSSLE FDEFDEAYLF TSSLDEKMPF LHMLQCVEEP 60 FKEPSFQNLL KLQQHLSNDK PWKQEVNSAS CRVSAECNQN GGLCRTQMEN SPPPTKERRK 120 RKRLRPAKNK EEVESQRMTH IAVERNRRRQ MNDHLNVIKS LIPTSYIQRG DQASIIGGAI 180 DFVKELEQLL ECLEAQRKER KGEGDEEGSP TSSTATGMAS NGRIGEGVCA EVKSEVGEIE 240 VTMIQAHVNL KIKCPKRQGQ LLKAIVALED LRLSVLHLNI STSQATATVL YSFNLKIEDE 300 CKLGSAVQIA GAVHEILSFI NDGSQVNEXE GKFEAVQWQW LTMEGSSLAM PCHAMPCQKE 360 NKEAIS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 117 | 124 | ERRKRKRL |
2 | 118 | 123 | RRKRKR |
3 | 137 | 148 | RMTHIAVERNRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46810.1 | 3e-66 | bHLH family protein |