PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022967684.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

RAV

Protein Properties

Length: 361aa MW: 41961.1 Da PI: 7.2055

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022967684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.8	8.2e-11	52	99	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++grW A+I+ + +r++lg+f ++++Aa a++ a+ kl+ XP_022967684.1 52 KFKGVV-PQQNGRWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIKLRT 99 799996.6679****999......44******99**********996 PP
2	B3	94.8	5.7e-30	176	267	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a +h +++ +++++++d+s ++W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+ XP_022967684.1 176 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesAEENSDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTY 267 99**************************98844556889**********************************************943 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEDEASSTFI SFTKSPLLID EVSDSNFSDY AIPDAKRMRL DHDLNDVATV EKFKGVVPQQ 60 NGRWGAQIYA NHQRIWLGTF KSEKDAAMAY DSAAIKLRTR DSHRNFPWTR LSIEEPKFQS 120 KFSIDAVLSM IKDGSYSSKF SAYLRTKSQI CDSNIQNLQT SENGDRDGHF SCSHLFQKEL 180 TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENSDDIEIVF YDTSMKTWKF RYCYWRSSQS 240 FVFTRGWNRF VKEKKLKAND IITFYTYESC ERDKNGGTLI FIDVIYKKPE DDQSESSCLA 300 AERESIKHEQ LQRELGLDRE DCEGKKKKKE EEEEILKREK LNPSSQNVGQ KRIRLFGVHI 360 D

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEDEASSTFI SFTKSPLLID EVSDSNFSDY AIPDAKRMRL DHDLNDVATV EKFKGVVPQQ  60
NGRWGAQIYA NHQRIWLGTF KSEKDAAMAY DSAAIKLRTR DSHRNFPWTR LSIEEPKFQS  120
KFSIDAVLSM IKDGSYSSKF SAYLRTKSQI CDSNIQNLQT SENGDRDGHF SCSHLFQKEL  180
TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENSDDIEIVF YDTSMKTWKF RYCYWRSSQS  240
FVFTRGWNRF VKEKKLKAND IITFYTYESC ERDKNGGTLI FIDVIYKKPE DDQSESSCLA  300
AERESIKHEQ LQRELGLDRE DCEGKKKKKE EEEEILKREK LNPSSQNVGQ KRIRLFGVHI  360
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-100	RAV family protein