PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027185847.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 353aa MW: 39344 Da PI: 8.8892

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027185847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.8	1.4e-18	18	102	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+++Liea+r ++er +++ ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ ++ XP_027185847.1 18 WTVQETMVLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLADH 102 ************777777664334555556666599***************************************997443 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MANQGGNNVL RDYRKGNWTV QETMVLIEAK RMDDERRMKR QGDSVGGEKP GGKPAELRWK 60 WVEDYCWRNG CLRSQNQCND KWDNLMRDFK KVREYERRLA DHQQQLITIG ESSSERERSD 120 EKSYWKLEKN ERKANNLPSN LLPQIYDALV EVVEKKVQRG SVVGLVGAGG TTASIPNVPP 180 SSAAALVGQP SSLPPSMQHL PISPPVSALP LPPPVVAQTP VQQQQQQQHP HTHPFSQQLP 240 TVDSDTSEHS DSPAKRRRRG EGTSGGASGS ESHEVGTAIS RSASVIAETI QACEEREERR 300 HRELLSLHER RLQIEESKAE ISRQGINGLV DAVNKLANSI LALASHKTQS TPK

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MANQGGNNVL RDYRKGNWTV QETMVLIEAK RMDDERRMKR QGDSVGGEKP GGKPAELRWK  60
WVEDYCWRNG CLRSQNQCND KWDNLMRDFK KVREYERRLA DHQQQLITIG ESSSERERSD  120
EKSYWKLEKN ERKANNLPSN LLPQIYDALV EVVEKKVQRG SVVGLVGAGG TTASIPNVPP  180
SSAAALVGQP SSLPPSMQHL PISPPVSALP LPPPVVAQTP VQQQQQQQHP HTHPFSQQLP  240
TVDSDTSEHS DSPAKRRRRG EGTSGGASGS ESHEVGTAIS RSASVIAETI QACEEREERR  300
HRELLSLHER RLQIEESKAE ISRQGINGLV DAVNKLANSI LALASHKTQS TPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-56	Trihelix family protein