PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027184954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 375aa MW: 40054.9 Da PI: 8.0129 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 37 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ ++ H H XP_027184954.1 37 FKCHVCHKKLSTAGGMQIHVLQvH 60 89*****************87655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence |
MGKKKKRAQT SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH 60 KENVSKVPNA KPGRESTDIE IYGMQGIPPD ILAAHYGEED DEAPAKTPKV EIPPTQVGGV 120 VQGSLGVGFP PQSSVGVMPT LYNPAVPIPP AGWPVAPRPQ PWYPQHSAVS VPPSAPLGLP 180 PQPLFPVQNL RPPLPPTAPP GLQASVPVVP PGLPAPPPIP VSQPLFPVVP SSNVPAQNSA 240 FSAPMLPTSL PLSTLTETKN SVDGYLNNNA SVTNTFATPG IPAAMPVNSH SYASGPNTGG 300 PSIGPPPVIA NKAPASQPAG NEVYLVWDDE AMSMEERRMS LLKYQVHDET SQMSSIDAAI 360 DRRISESRLA GRMAF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 1e-138 | C2H2 family protein |