PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027184405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GATA | ||||||||
Protein Properties | Length: 369aa MW: 40201 Da PI: 6.2251 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.4 | 1.8e-17 | 257 | 291 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l XP_027184405.1 257 CLHCGSEKTPQWRTGPMGPKTLCNACGVRFKSGRL 291 99*****************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence |
MEASSEFFVG GYFSHAGDNE FDHKSMENQN ITGNSNNFTV DDLLDFPKED EVMTDAFFDS 60 ITGNSGESSS LTVVDSCNSS VSGGDRQFNG NISCRSFTDT QFSGTELCVP YDDLAELEWL 120 SNFVEESFSS DDLHNLHLIS PTTNFTAPSA SSAATANATT DTSSSATTIS TNNDNSNSSS 180 PVFPSDVSFP GKARSKRSRA APCNWASRLV LLASPATSSS EPTNDVNTPN PISVTIKAPK 240 PAPSRKRETT ETPGRQCLHC GSEKTPQWRT GPMGPKTLCN ACGVRFKSGR LVPEYRPAAS 300 PTFVSAKHSN SHRKVLELRR QKELQRQQQQ LLSQASIFGV SNGGDEYLIH HHHHHPHQQN 360 VGPDHRLMI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 8e-60 | GATA family protein |