PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182766.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 506aa MW: 55807.5 Da PI: 6.4454

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.7e-17	167	216	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027182766.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216 78*****************......55**********************997 PP
2	AP2	42	2.3e-13	259	309	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_027182766.1 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 309 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MLDLNLSVVN DEEAGIFEEG MGEYESAEET SDSSVVNAEA AEASSNATTV DDDTCSARAG 60 ANSSSDLLTF NFDILKVNGA NRGEEVEGED ENQVVFGGRM TAAHQPDFVT KNLFPVAELG 120 PGRAPDRARS NAGNWADLSF SHQQKQPPQQ QQQQVKKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFTICDYEE DMKQMKNLTK 240 EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY 300 DKAAIKCNGR EAVTNFEPST YEPEMPSNMV QPHSQNEGSH HDLDLNLGIS TSSGKENGSS 360 RDVHYHPYDV QKARISKIDI SSTTVNSPPL KGLPLTPERP QLWTGVYSNS MPNYKERVIE 420 NRFEVGSSQG PQKWAWQMQS QLSATPVTVF STAASSGFSS SASNASSPSS KAPNSSAVGL 480 CFASYPVSSA NNSQCRFQLG PQWPPT

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MLDLNLSVVN DEEAGIFEEG MGEYESAEET SDSSVVNAEA AEASSNATTV DDDTCSARAG  60
ANSSSDLLTF NFDILKVNGA NRGEEVEGED ENQVVFGGRM TAAHQPDFVT KNLFPVAELG  120
PGRAPDRARS NAGNWADLSF SHQQKQPPQQ QQQQVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFTICDYEE DMKQMKNLTK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY  300
DKAAIKCNGR EAVTNFEPST YEPEMPSNMV QPHSQNEGSH HDLDLNLGIS TSSGKENGSS  360
RDVHYHPYDV QKARISKIDI SSTTVNSPPL KGLPLTPERP QLWTGVYSNS MPNYKERVIE  420
NRFEVGSSQG PQKWAWQMQS QLSATPVTVF STAASSGFSS SASNASSPSS KAPNSSAVGL  480
CFASYPVSSA NNSQCRFQLG PQWPPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-107	AP2 family protein