PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027182759.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 21145.9 Da PI: 7.8875 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 226.3 | 8e-70 | 16 | 183 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 d+f sseq+Cyv+Cn C+t+lavsvP tslf++vtvrCGhCt+ll vn ++ ll++ ++l++++ ++ + ++++s + + ++t+ XP_027182759.1 16 DHFASSEQLCYVHCNICDTVLAVSVPCTSLFQTVTVRCGHCTNLLPVN--MRGLLLPSANQLHNHFGHTFFSPSPNFLDQISSPTPNFLMNQTTA 108 7999*****************************************965..667789999999999988866666666666666555555555555 PP YABBY 97 ssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s ++l ++ ++pr+p ++rPPe+rqr+Psaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl XP_027182759.1 109 SDFTLpPQTGFSDLPRPPVMNRPPERRQRIPSAYNRFIKEEIQRIKATNPDISHREAFSAAAKNWAHFPHIQFGL 183 5556646777899***999******************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MSSSSTSSTT TTWSLDHFAS SEQLCYVHCN ICDTVLAVSV PCTSLFQTVT VRCGHCTNLL 60 PVNMRGLLLP SANQLHNHFG HTFFSPSPNF LDQISSPTPN FLMNQTTASD FTLPPQTGFS 120 DLPRPPVMNR PPERRQRIPS AYNRFIKEEI QRIKATNPDI SHREAFSAAA KNWAHFPHIQ 180 FGLMPDQTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 9e-70 | YABBY family protein |