PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027182618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36427.9 Da PI: 6.8567 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed l+d++k +G g W++ +++ g++R++k+c++rw++yl XP_027182618.1 14 RGAWTPSEDRMLIDYIKSHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027182618.1 67 RGNITADEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7999******************.*********.************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence |
MGRSPCCAKE GLNRGAWTPS EDRMLIDYIK SHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TADEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAKKIRGDQ 120 NLATRSSCVK RKPASTIKSR SVPVLQNLTS THQPPNSEKL EGSATHVVRT KARRLTKVFI 180 NADLQTSCTQ QEQPGMMMAV KAAPSGADAK YGFNDTRTSD NSEEVGPEPA SGAFSGEEGY 240 YSSDFMMDFE MDDDFLSEFL NTDFMEFEQD FPEGPAQGTC IEANDFSPNY CPRPLSHDDR 300 NAQPDLDSMT TLLHTAVAWL HEDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-63 | MYB family protein |