PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182431.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 859aa MW: 95870.1 Da PI: 8.2944

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	486	508	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sF++ L H+r+H XP_027182431.1 486 HKCKLCSRSFPSGRALGGHMRSH 508 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MGMAEDHVGQ LQEPTFKHFC RVCKRGFGCA GALGGHMRSH AVGDVRMHQS SRDQEIGTSG 60 FMRSNKGEGG SKHSYFLRTN STNRFTGACP AGEDLQEFNN KRAFTRSAFH DERGKFSSSV 120 SSSESEVEEM MLKSARAKSK YYEDRHCAAS SEEEDLANCL VMLSNESFVQ SDKEQENTDK 180 HVEKGMFQCK ACKKVFNSHQ ALGGHRASHK KVKGCYAARF NSSTNLNDQD NDNNYEDVFY 240 QHEEHLVPSE NSSEPGLDLD FSPHHDHLPK NTTLSKRKSK AHQCSICQRV FSSGQALGGH 300 KRCHWLTSNL PDNTIIQNLR EFQFDSQQLF KKPMLKKPEP PPLDLNFPPL LNNAVDNLHM 360 NSADDALNYE APARIFLQLW GNEEADNNTS NNNHQQKYTT KSVVRGSLHD EDERAKEDGY 420 RAKHIAKLSN LKDMNLDGGS SRWLQSTLHI HYTRKLKKIT GKPLQSLALL CGEKSQKRKM 480 VRPERHKCKL CSRSFPSGRA LGGHMRSHLA NLPLPPKTPQ KQEASRQLPP QPGGDGSTES 540 TTSSDCSLSE EEVVVVQVKE CAAEDKGLVY GLRENPKKSF RMVDRQFLDG GSVVVQDRGS 600 ETESTRKPTR RRSKRTRRML VSAAKQEGAD EALIKEKKMM KTTESLLELE QPVSSVSDTS 660 PEEDLALCLI MLSRDVWRRT STTTTTSYDS AEELKLLNSS TKRRHKKQKK IKINNNDSSS 720 GQEGESSEEL ELPRNGVSRS CSIKNVTVDK KVHECPFCGK VYGSGQALGG HKRSHFLGSS 780 TTLTTTTTAA TTAAAAAAAA ESLLLESSSN SAKSQQGTLL MIDLNLPAPM EDEDIDDDHP 840 RESEDINLHH RRGFCSFRC

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MGMAEDHVGQ LQEPTFKHFC RVCKRGFGCA GALGGHMRSH AVGDVRMHQS SRDQEIGTSG  60
FMRSNKGEGG SKHSYFLRTN STNRFTGACP AGEDLQEFNN KRAFTRSAFH DERGKFSSSV  120
SSSESEVEEM MLKSARAKSK YYEDRHCAAS SEEEDLANCL VMLSNESFVQ SDKEQENTDK  180
HVEKGMFQCK ACKKVFNSHQ ALGGHRASHK KVKGCYAARF NSSTNLNDQD NDNNYEDVFY  240
QHEEHLVPSE NSSEPGLDLD FSPHHDHLPK NTTLSKRKSK AHQCSICQRV FSSGQALGGH  300
KRCHWLTSNL PDNTIIQNLR EFQFDSQQLF KKPMLKKPEP PPLDLNFPPL LNNAVDNLHM  360
NSADDALNYE APARIFLQLW GNEEADNNTS NNNHQQKYTT KSVVRGSLHD EDERAKEDGY  420
RAKHIAKLSN LKDMNLDGGS SRWLQSTLHI HYTRKLKKIT GKPLQSLALL CGEKSQKRKM  480
VRPERHKCKL CSRSFPSGRA LGGHMRSHLA NLPLPPKTPQ KQEASRQLPP QPGGDGSTES  540
TTSSDCSLSE EEVVVVQVKE CAAEDKGLVY GLRENPKKSF RMVDRQFLDG GSVVVQDRGS  600
ETESTRKPTR RRSKRTRRML VSAAKQEGAD EALIKEKKMM KTTESLLELE QPVSSVSDTS  660
PEEDLALCLI MLSRDVWRRT STTTTTSYDS AEELKLLNSS TKRRHKKQKK IKINNNDSSS  720
GQEGESSEEL ELPRNGVSRS CSIKNVTVDK KVHECPFCGK VYGSGQALGG HKRSHFLGSS  780
TTLTTTTTAA TTAAAAAAAA ESLLLESSSN SAKSQQGTLL MIDLNLPAPM EDEDIDDDHP  840
RESEDINLHH RRGFCSFRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	4e-26	C2H2 family protein