PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027182424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 39065.8 Da PI: 5.455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.9e-13 | 12 | 57 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W++eEde+l + vk+ G+++W++I ++ + Rt+k+c++rw + XP_027182424.1 12 KGPWSAEEDEILMNFVKENGPRDWSSIRSKGLLPRTGKSCRLRWVN 57 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 40.3 | 7.4e-13 | 68 | 108 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ +++ + lG++ W++Ia +++ gRt++++k++w XP_027182424.1 68 KFSAEEERVVLELQATLGNK-WAAIATYLP-GRTDNDVKNFWS 108 79******************.*********.***********5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence |
MERLRAQEDI KKGPWSAEED EILMNFVKEN GPRDWSSIRS KGLLPRTGKS CRLRWVNKLQ 60 PNLKKGCKFS AEEERVVLEL QATLGNKWAA IATYLPGRTD NDVKNFWSTR QKRLARILRA 120 SSQPNRAHKH TAKAPVVNEA STLQAQDSNL EHDSEKNSKS PSLSTRSTLV ASVSSFNQVK 180 ETSLQCHICS CFWSENANAI NILPPPDCLN MGTAGVISGV PPAVDEHTSP PQLCIQSNNH 240 QPSVSPPFGI SFSTEQPKPA LNNLPLWQEN QDFGAELGEP NFMGALTQQE SLEVGNMAQH 300 NLGLSLDELE ATGQNFSEIN DYKDKMLTIP DTLFGDLSDD MLDNLDAVPR SSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 1e-64 | MYB family protein |