PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182303.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 412aa MW: 47292.3 Da PI: 9.1379

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.8	1.8e-17	118	210	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ps v+ +l pk+f+++h+ k ++ ++l de+ +++++k+ +k++ l++GW++F ++L gD+++F+l+++++f+++v+ XP_027182303.1 118 FVKLMLPSQVSGGFWLQWPKDFCQKHMPK--KDEYIVLLDENEKEYDIKYLAQKSG----LSGGWRGFSIKHQLSKGDVLIFQLVDSNKFKFKVH 206 89**********************866..4558***********555555....9********************99****** PP EE-S CS B3 96 vfrk 99 +f++ XP_027182303.1 207 IFKA 210 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MDKYVFVKPT RKRITCMQKE NTINKKPKRE SCPPMKVKIE VDEMQITCYD EMMEKNVESS 60 HVDSEKTKEN RKQIMCYSKN VETSSDSSMA GSDKAKSTAL LDRANEFLAK LPSDDPNFVK 120 LMLPSQVSGG FWLQWPKDFC QKHMPKKDEY IVLLDENEKE YDIKYLAQKS GLSGGWRGFS 180 IKHQLSKGDV LIFQLVDSNK FKFKVHIFKA KGGSRKLERD NGLLNSEGKV TSEIAKDVKE 240 TESFNILWNG EVIDSEISEH VRRQYYQLCC SQKSGLHDGL VKCIDKKLAA GIISETVKIA 300 DAIRAAEITA TSCNDVQRWD QTLKGFEGMG MNVAFLRATI KNILDSIQRK QQEKIKRKTN 360 ERAQAEKEMR NLETQLVNVK KKIRVLDDEI DVIRAQNEKL EHSFKETAIA PW

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MDKYVFVKPT RKRITCMQKE NTINKKPKRE SCPPMKVKIE VDEMQITCYD EMMEKNVESS  60
HVDSEKTKEN RKQIMCYSKN VETSSDSSMA GSDKAKSTAL LDRANEFLAK LPSDDPNFVK  120
LMLPSQVSGG FWLQWPKDFC QKHMPKKDEY IVLLDENEKE YDIKYLAQKS GLSGGWRGFS  180
IKHQLSKGDV LIFQLVDSNK FKFKVHIFKA KGGSRKLERD NGLLNSEGKV TSEIAKDVKE  240
TESFNILWNG EVIDSEISEH VRRQYYQLCC SQKSGLHDGL VKCIDKKLAA GIISETVKIA  300
DAIRAAEITA TSCNDVQRWD QTLKGFEGMG MNVAFLRATI KNILDSIQRK QQEKIKRKTN  360
ERAQAEKEMR NLETQLVNVK KKIRVLDDEI DVIRAQNEKL EHSFKETAIA PW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-33	B3 family protein