PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027179320.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 635aa    MW: 69321.4 Da    PI: 4.5255
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027179320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.32.3e-1092686353374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L+e A+ ++ +d  +a + L rl+e +s++gdp++R+a+yf+eAL  r++r   +  k+ +  +t+    +e +  +k++++++P+ kf+hlt
  XP_027179320.1 268 KALIESAR-LAGSDPDNAVKSLIRLRESVSQHGDPTERVAFYFLEALYGRVSR---QPEKSPTIFDTT---PEELTLCYKALNDACPYSKFAHLT 355
                     67888888.66779999************************************...333333444444...5688999***************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+e+ +++HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +p  g   + +l +tg+rL++fAe l+++fef++ v + +e+l
  XP_027179320.1 356 ANQAILEATENGTKIHIIDFGILQGVQWAALLQALATRPAGKPeRIRISGIPAPLLGksPEAALLATGKRLSDFAELLDLNFEFEP-VLTPIEEL 449
                     ***************************************76666*********9988889999***********************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +  +++v+p+E laVn++lql++lld++ + ++   + Lkl kslsP vv++ e e+++n+  Fl+rf +al+yysalf+sl+ +l r+s+er  
  XP_027179320.1 450 TGASFQVDPDEILAVNFMLQLYNLLDDDKCGAE---AALKLAKSLSPSVVTLGEYEVSLNRVGFLARFKNALKYYSALFESLDPNLTRDSDERLR 541
                     *************************99999998...9********************************************************** PP

            GRAS 285 vErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     vE  l+gr+i  vv  e++   rr r+e +e+Wr  +e+aGF+pv+ls++a++qa  ll  ++ s+ y++ ++   ++ l W+d pL++vS+Wr
  XP_027179320.1 542 VESLLFGRRIAGVVGPEEETgtRRDRMEDKEQWRILMESAGFEPVTLSHYAMSQAGILLWSYNySQSYKLVDSPPGFLsLAWNDLPLLTVSSWR 635
                     **************99887667*****************************************99****9988766666**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQQQQQQFLG INPFCLSPWS TTTHSSLTTS  60
PALGYGLTGP GFADPFQVPG GCPDSAEPGF QFPPLDHHST GFRFPDFCGA PGGEFDSDEW  120
MESLMGGGDS TESSNLHSGC DAWQTGSDFN ATTIYGADPF AACPSRLSIG SSPPSSDLNR  180
VIFSETSQKS SAPPDPPQTQ PSSQWVPPSS SPPSSPLHPT AKDSSKQQQQ QQQQQQQQQQ  240
NSASQNDAAA ACTSSTSPDA SPSKPLLKAL IESARLAGSD PDNAVKSLIR LRESVSQHGD  300
PTERVAFYFL EALYGRVSRQ PEKSPTIFDT TPEELTLCYK ALNDACPYSK FAHLTANQAI  360
LEATENGTKI HIIDFGILQG VQWAALLQAL ATRPAGKPER IRISGIPAPL LGKSPEAALL  420
ATGKRLSDFA ELLDLNFEFE PVLTPIEELT GASFQVDPDE ILAVNFMLQL YNLLDDDKCG  480
AEAALKLAKS LSPSVVTLGE YEVSLNRVGF LARFKNALKY YSALFESLDP NLTRDSDERL  540
RVESLLFGRR IAGVVGPEEE TGTRRDRMED KEQWRILMES AGFEPVTLSH YAMSQAGILL  600
WSYNYSQSYK LVDSPPGFLS LAWNDLPLLT VSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-172GRAS family protein