PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179091.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 354aa MW: 40007.3 Da PI: 4.6558

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ + G +W+++++ g+ R++k+c++rw +yl XP_027179091.1 14 KGPWTADEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51	3.3e-16	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ XP_027179091.1 71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 6779************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRQPCCDKV GLKKGPWTAD EDKKLISFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPVTHKPLP PSTTITADQP PQEEQPENNL DSDQQAKKGP PPFSNSASDT IPEIAQQNRE 180 AETSMQSTLT EAKEEDDKSN NHSQSPIDSS PMEVNNGFCI DEVPLIEPDA ILVPYPNSSS 240 TPSSSSSSSS SSCSYDRSSN NYNAFDHHQE MLPTMDYCWQ LSSSSASSCD YYYDTNNMNM 300 DFWDDDFISN WDMLLNDNSD RNNVAAVLGV EPSLVQYPPE MVQLDEDSWN FYHL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRQPCCDKV GLKKGPWTAD EDKKLISFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPVTHKPLP PSTTITADQP PQEEQPENNL DSDQQAKKGP PPFSNSASDT IPEIAQQNRE  180
AETSMQSTLT EAKEEDDKSN NHSQSPIDSS PMEVNNGFCI DEVPLIEPDA ILVPYPNSSS  240
TPSSSSSSSS SSCSYDRSSN NYNAFDHHQE MLPTMDYCWQ LSSSSASSCD YYYDTNNMNM  300
DFWDDDFISN WDMLLNDNSD RNNVAAVLGV EPSLVQYPPE MVQLDEDSWN FYHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	2e-92	MYB family protein