PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027179054.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 262aa MW: 28817.8 Da PI: 4.5627 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.4 | 2.7e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+sk+ elf+ +l r++ + + +t++ ++++v++ ++fdfl div r XP_027179054.1 1 MQADEDVGKIAMAVPLLVSKSLELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLRDIVSR 69 899***************************************************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence |
MQADEDVGKI AMAVPLLVSK SLELFLQDLC DRTYEITLKR GAKTVNSLHL KQCVQSFNVF 60 DFLRDIVSRV PDLGGSEAAA EGSSARKRKA IEDEGNDSDN EAKKSHVSET GHTSGRGRGR 120 GRGRGRGRAN RTLEKESISQ HEKYEDDLDI SLQNGDKKSI NIKRMDNGAN PDDTKISLVA 180 QNAEAPVRNF DLNVDLNENA DSAAIPAGTP STSSAKPPME VRPEEYPGWS LADMESMAID 240 PVQLAKLNQR IEEEEEDYDE EG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 116 | 125 | RGRGRGRGRG |
2 | 116 | 126 | RGRGRGRGRGR |
3 | 118 | 127 | RGRGRGRGRG |
4 | 118 | 128 | RGRGRGRGRGR |
5 | 120 | 129 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 9e-49 | NF-YC family protein |