PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027174767.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 422aa    MW: 49022.1 Da    PI: 4.6026
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027174767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31.1e-161596188
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                    ffk ++p   +++ r+ +p  f+ ++ + k  s    l+d+ g++W v++   + ++ +++ +GW eFv++n ++ gDf+vF++dg+s
  XP_027174767.1 15 FFKFFIP--DSSKERMKIPSAFT-SYLKAK-LSPRAYLRDRFGNKWPVRV--GRIGDDFFFLDGWAEFVEENSVELGDFLVFQYDGHS 96
                    7888844..4555679******9.773333.5568***************..99999999999*********************9853 PP
2B335.22.2e-11330411993
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      + +++ l++p + +++h++k   +++++l d++gr+W+ + +++k + r++  +GW++ ++ n +   D+++ +++++ ++ l+
  XP_027174767.1 330 RARRQDALYVPHDILRDHNLK--LPQEIILVDQQGREWTSTRNHWKDG-RFWYHGGWSSLCRVNIVGFDDICICEFKRKVGGGLY 411
                     5567789***********999..7889***************999996.788899******************998877555455 PP
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    
MESSRMHDNQ RLRAFFKFFI PDSSKERMKI PSAFTSYLKA KLSPRAYLRD RFGNKWPVRV  60
GRIGDDFFFL DGWAEFVEEN SVELGDFLVF QYDGHSLYDV KLLGHSACEK KGVGALKVLK  120
HEEEEQMEEA CEVKEVEGEE EEEADEANEV KKEEQEEDNW EKEEEEGEEE TNEDKQGEME  180
ESNNSLEVNE AETEGEKEQD ADEIEQKKEG EGEINEDKQE KEMGKCYSNT IETEANSDYM  240
MEAEDDSTQK EEEGNVEEEP AAKTHSKVAT VDSKSSSKGK KKIRGGKHES KAVKGHKRRR  300
RWLIDPYGYD LFKSGCISQP KNPYFVTQKR ARRQDALYVP HDILRDHNLK LPQEIILVDQ  360
QGREWTSTRN HWKDGRFWYH GGWSSLCRVN IVGFDDICIC EFKRKVGGGL YIEVQILHPQ  420
DI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280301KKKIRGGKHESKAVKGHKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-17B3 family protein