PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172161.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 574aa MW: 63363.1 Da PI: 6.8367

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	123	141	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C +Cgk+F+++ +L H+r XP_027172161.1 123 CAICGKVFPSRKSLFGHMR 141 ******************8 PP
2	zf-C2H2	12.9	0.00034	427	449	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs++ L H ++H XP_027172161.1 427 FRCSTCDKTFSSHQALGGHRSSH 449 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MEENKNSNLG KEKQSGSVEG KNNHHESKTN PVSIDGKLLV KLKFPKGAEE TEEGAEVVVS 60 PVKKSHFCHE CNKGFSSGKA LGGHMSSAHV QARENLKKLK FNKSIKFKRD GSSSDAAARE 120 TICAICGKVF PSRKSLFGHM RCHPDREWRG MEPPKEQGKI PHDHPQCLSN LHDDEEEEEE 180 EEDESLETDN HADYHVDAVA DNVAISTVAE VVDLTGSMSS WSVKGKRGGE CPRVLLDTYS 240 QEEEQKILDA VDQLISLAHK QIIHDGSSTR RGQIKEARNG ASGLKKKRVD DQVHPARVRR 300 DYPVKKRQFS EIATDSEETL DGLLDKGKRK DPMKPESGVE ISPSSQSRDT VIGKIHGRSN 360 YFSGHELDKM EVGQQNHCFY NDCKKGNVGV KNKRRGPKTT PKNSETEGEL TPLDQNLDGE 420 ESTPEKFRCS TCDKTFSSHQ ALGGHRSSHN KFKATVQNTA NGSSPFPSGH ENRAKPVSQT 480 AAENDEIKRV DASKFAENIH ECTLCKKTFP SGQALGGHKR CHWQGLSSQI VSPEAEEPRP 540 LVRKGLQFDL NEPAEEEDAN TSDLGNSSGD ASCS

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MEENKNSNLG KEKQSGSVEG KNNHHESKTN PVSIDGKLLV KLKFPKGAEE TEEGAEVVVS  60
PVKKSHFCHE CNKGFSSGKA LGGHMSSAHV QARENLKKLK FNKSIKFKRD GSSSDAAARE  120
TICAICGKVF PSRKSLFGHM RCHPDREWRG MEPPKEQGKI PHDHPQCLSN LHDDEEEEEE  180
EEDESLETDN HADYHVDAVA DNVAISTVAE VVDLTGSMSS WSVKGKRGGE CPRVLLDTYS  240
QEEEQKILDA VDQLISLAHK QIIHDGSSTR RGQIKEARNG ASGLKKKRVD DQVHPARVRR  300
DYPVKKRQFS EIATDSEETL DGLLDKGKRK DPMKPESGVE ISPSSQSRDT VIGKIHGRSN  360
YFSGHELDKM EVGQQNHCFY NDCKKGNVGV KNKRRGPKTT PKNSETEGEL TPLDQNLDGE  420
ESTPEKFRCS TCDKTFSSHQ ALGGHRSSHN KFKATVQNTA NGSSPFPSGH ENRAKPVSQT  480
AAENDEIKRV DASKFAENIH ECTLCKKTFP SGQALGGHKR CHWQGLSSQI VSPEAEEPRP  540
LVRKGLQFDL NEPAEEEDAN TSDLGNSSGD ASCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	7e-19	C2H2 family protein