PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172153.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 577aa MW: 64399.4 Da PI: 6.7641

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	122	141	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C++Cgk F+++ +L H+r XP_027172153.1 122 ICSICGKDFPSRKSLFGHMR 141 5******************8 PP
2	zf-C2H2	12.8	0.00035	430	452	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs++ L H ++H XP_027172153.1 430 FRCSTCDKTFSSHQALGGHRSSH 452 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MEENKNSNLG KEKQSRLVEE EKNHHESKTN PVSMDGKLLV KLKFPKGAEE TEEGAEVVVS 60 PVKKSHFCHE CNKGFSSGKA LGGHMSSAHV QARENLKKLK FNMSVKFKRD GSSSDAAARE 120 TICSICGKDF PSRKSLFGHM RCHPDREWRG MEPPKEQGKI PREHPQSLSI LDDDDEEEEE 180 EEEEESLETD NQADYHVHVA ADNVAISTVA EVVDLTRSLS SWSVKGKRGR ECPRVLLDTY 240 PYCEEEEQKI QDAVDQLISL AYKQNKHDGS STRRGQIKEG RNSASGLKKK RVDDPVHPAR 300 VRRDYPVKKR RFSEIDTDSE ETLDGLSDKG KRKNPMKPES SVEISPSSQS RHTVIGKISG 360 RSNHFSAHEL DKMELEKQNR CFYDDCKKGN VGVKNKRRGP KMTPKNSETE GELTPLDQKL 420 DGEESTPEKF RCSTCDKTFS SHQALGGHRS SHNKFKATVQ NTADGSSPFP FGHENRANPV 480 SQTAVENDEI KGVEASKFPE NIHECTLCKK TFPSGQALGG HKRCHWQGLS SQVASPEAEE 540 PRPLARKGLQ FDLNEPAEEE DANASDLGNS SGYASCS

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MEENKNSNLG KEKQSRLVEE EKNHHESKTN PVSMDGKLLV KLKFPKGAEE TEEGAEVVVS  60
PVKKSHFCHE CNKGFSSGKA LGGHMSSAHV QARENLKKLK FNMSVKFKRD GSSSDAAARE  120
TICSICGKDF PSRKSLFGHM RCHPDREWRG MEPPKEQGKI PREHPQSLSI LDDDDEEEEE  180
EEEEESLETD NQADYHVHVA ADNVAISTVA EVVDLTRSLS SWSVKGKRGR ECPRVLLDTY  240
PYCEEEEQKI QDAVDQLISL AYKQNKHDGS STRRGQIKEG RNSASGLKKK RVDDPVHPAR  300
VRRDYPVKKR RFSEIDTDSE ETLDGLSDKG KRKNPMKPES SVEISPSSQS RHTVIGKISG  360
RSNHFSAHEL DKMELEKQNR CFYDDCKKGN VGVKNKRRGP KMTPKNSETE GELTPLDQKL  420
DGEESTPEKF RCSTCDKTFS SHQALGGHRS SHNKFKATVQ NTADGSSPFP FGHENRANPV  480
SQTAVENDEI KGVEASKFPE NIHECTLCKK TFPSGQALGG HKRCHWQGLS SQVASPEAEE  540
PRPLARKGLQ FDLNEPAEEE DANASDLGNS SGYASCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	311	KKKRVDDPVHPARVRRDYPVKKRR
2	289	312	KKKRVDDPVHPARVRRDYPVKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	8e-19	C2H2 family protein