PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027172095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29939 Da PI: 5.0135 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l +v ++G +W+ ++ g+ R++k+c++rw +yl XP_027172095.1 14 KGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+el+++ +k+lG++ W++I ++++ gRt++++k++w+++l XP_027172095.1 67 RGNFSEEEEELILKSHKELGNR-WSAITARLP-GRTDNEVKNYWHTHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MVRTTCIDKS GLKKGAWSEE EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LRPGVKRGNF SEEEEELILK SHKELGNRWS AITARLPGRT DNEVKNYWHT HLRKRNKQDS 120 KPKDKIEQTS ERSQPMDSDA DQDKESSAIS IFHSTTDQNR SGLETEIAAD TNCELSPLSC 180 GSKHFDGGDW FGEDSNSSVE SLPESFESFW TEPFALDTSY SNLKVINYDW LPPVEEEFTY 240 ASSSFLDEDM DWFHELIQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-57 | MYB family protein |