PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027170195.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 241aa    MW: 27694.3 Da    PI: 8.7405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027170195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ +Ed++l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
   XP_027170195.1 14 KGAWSDDEDKKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding54.42.9e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++++++qlG++ W++Ia +++ gR+++++k++w++
   XP_027170195.1  67 RGNYTVEEEDLIIKLHEQLGNR-WSAIAGKLP-GRSDNEVKNYWHT 110
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MVRSPYIDKK GLKKGAWSDD EDKKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPGLKRGNY TVEEEDLIIK LHEQLGNRWS AIAGKLPGRS DNEVKNYWHT RLRKRINQDP  120
RSTKIIKQTS DQKTGHMHDA NQIKLSAAIS DSDSNDKREM EPNIAAAAPV ADTKMSSLIC  180
DSSLSDSNSS VEYSFAESFE SFWTQPFILD ASYNSNVLAL PPMEEEFTFL SPPMFIYDGM  240
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-57MYB family protein