PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169677.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 390aa MW: 43979.3 Da PI: 5.6745

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.4	4.7e-38	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dCvlapyfpa+q+k+f+n+h+lFG+s+++k+l++l e++e+am+s+ ye+++r r Pv+G++g++++l++ql+ + +el XP_027169677.1 10 ACAACKYQRRKCSSDCVLAPYFPANQHKSFQNAHRLFGVSKIVKILEQLsTLEQQEEAMKSIKYESDMRERYPVHGCAGIVHHLREQLRLATEEL 104 7**********************************************445669************************************** PP DUF260 95 allkee 100 +++ ++ XP_027169677.1 105 HYVYAQ 110 998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MTVKGGTSPA CAACKYQRRK CSSDCVLAPY FPANQHKSFQ NAHRLFGVSK IVKILEQLST 60 LEQQEEAMKS IKYESDMRER YPVHGCAGIV HHLREQLRLA TEELHYVYAQ LAAYREQIPN 120 NQQQLGCSSS DYSSSHQPQL LHSGGMINNS CSTTQSIDAL PFFQHHSAGS MHDYEMPFTM 180 DYFLANENYA DDDEGVRHRD SNDHVAKPLL GSEPVYTNTP PDPYCDLIRN NVNSVVGNQP 240 EVIANSNQVF GIQPEIKVFD QDYEDMPPFN AVVDDRQSYV ETKEACESSS VESSFRDFPQ 300 PVEQESEMEN SKSKHKWKMG AILAHMRPIV VVVVHGELNL PLLDFAADQV TFFPTQKCLF 360 LSLSGFPRLE LRVSATVGAG KSCLENWKDR

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MTVKGGTSPA CAACKYQRRK CSSDCVLAPY FPANQHKSFQ NAHRLFGVSK IVKILEQLST  60
LEQQEEAMKS IKYESDMRER YPVHGCAGIV HHLREQLRLA TEELHYVYAQ LAAYREQIPN  120
NQQQLGCSSS DYSSSHQPQL LHSGGMINNS CSTTQSIDAL PFFQHHSAGS MHDYEMPFTM  180
DYFLANENYA DDDEGVRHRD SNDHVAKPLL GSEPVYTNTP PDPYCDLIRN NVNSVVGNQP  240
EVIANSNQVF GIQPEIKVFD QDYEDMPPFN AVVDDRQSYV ETKEACESSS VESSFRDFPQ  300
PVEQESEMEN SKSKHKWKMG AILAHMRPIV VVVVHGELNL PLLDFAADQV TFFPTQKCLF  360
LSLSGFPRLE LRVSATVGAG KSCLENWKDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-37	LBD family protein