PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169519.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 352aa MW: 39822.7 Da PI: 8.6887

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51	2.6e-16	61	140	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +p +f+++++++ ++t +le ++grsW + + k ++ +++++GW++Fv++n L+ Df++F ++g s+f +v +f k XP_027169519.1 61 AFRKIPPDFVKKFDKDV--PQTFILEGPQGRSWLILV--VKVGECFYFQEGWQNFVEDNSLENDDFLTFCYSGCSTF--YVEIFGK 140 4568*******8774..569***********..8888889**********************9985666..9999875 PP
2	B3	44.2	3.4e-14	214	294	5	91
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 lt+ +++k + +p++f e+ +++ ++ + + +gr+W+v++ +++ ++l++GW+ F+k+n LkegD + F+l++++ ++ XP_027169519.1 214 LTKTYANK--YVKFPRDF--ENVENHWRNGKSAFLRVQGREWKVNI--AESGKYFFLSTGWSTFAKENSLKEGDECNFELIDNNATQ 294 43333333..36777777..33333444456677888*******..999999************************9876554 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGKRDLEKER RPTVFPCMIM IGILCFGIVQ GFKIGVISMS VGMSAQFNII IPVSRVNDKA 60 AFRKIPPDFV KKFDKDVPQT FILEGPQGRS WLILVVKVGE CFYFQEGWQN FVEDNSLEND 120 DFLTFCYSGC STFYVEIFGK HGCRKKVACT TWKDNAMHRN DNAVEQLHGK SNNSPKQMGR 180 SLRSGTRGSC SEISQAGKVQ DNSRHNSDLF KVQLTKTYAN KYVKFPRDFE NVENHWRNGK 240 SAFLRVQGRE WKVNIAESGK YFFLSTGWST FAKENSLKEG DECNFELIDN NATQLLCPFL 300 GLIAMYWPFA FCILSSPEGN VASLVKSYKS GDCVVVIRIG KDGVSYGICG YL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGKRDLEKER RPTVFPCMIM IGILCFGIVQ GFKIGVISMS VGMSAQFNII IPVSRVNDKA  60
AFRKIPPDFV KKFDKDVPQT FILEGPQGRS WLILVVKVGE CFYFQEGWQN FVEDNSLEND  120
DFLTFCYSGC STFYVEIFGK HGCRKKVACT TWKDNAMHRN DNAVEQLHGK SNNSPKQMGR  180
SLRSGTRGSC SEISQAGKVQ DNSRHNSDLF KVQLTKTYAN KYVKFPRDFE NVENHWRNGK  240
SAFLRVQGRE WKVNIAESGK YFFLSTGWST FAKENSLKEG DECNFELIDN NATQLLCPFL  300
GLIAMYWPFA FCILSSPEGN VASLVKSYKS GDCVVVIRIG KDGVSYGICG YL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06160.1	1e-15	B3 family protein