PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027169516.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 332aa    MW: 38370.6 Da    PI: 9.4169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027169516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95e-2074164199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv    d l s++l +p +f+++++g+   ++t tle ++grsW++     k ++ +++++GW++Fv++n L+  Df++F++ g s+f  +v 
  XP_027169516.1  74 FFKVY--TDQLCSSQLKIPPEFVKKFNGDV--PQTFTLEGPQGRSWQIVA--GKVDEYFYFQEGWQNFVEDNSLENDDFLTFSYGGCSRF--YVE 160
                     77888..8999999************8775..458***************..999999*************************9775666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f k
  XP_027169516.1 161 IFGK 164
                     9875 PP
2B339.31.2e-122433171390
                     TT-EE--HHH...HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3  13 sgrlvlpkkf..aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     ++ + +p++f  +++h     ++ +  l   + r+W+v +   k+++ + l +GW++Fvk+n Lk gD + F+++++ +++
  XP_027169516.1 243 NRYVKFPRDFgnVKKH----WKKGKGALLRVQAREWKVSI--AKSGRYFHLCTGWSSFVKENSLKIGDECNFEVIDNnDDG 317
                     3446788888333333....2223456777888*******..99999999999********************99874444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MRAYKARIWR MRAEIPRIQE MRGTQSSCSI CWSHSVSVDG LRLFGQELLY KVAGNTKYMK  60
QNSKVLYSDE SPMFFKVYTD QLCSSQLKIP PEFVKKFNGD VPQTFTLEGP QGRSWQIVAG  120
KVDEYFYFQE GWQNFVEDNS LENDDFLTFS YGGCSRFYVE IFGKHGCRKE GAFTIWNDAM  180
HRNENAVEQL HGKLNNTTQP MGRSLRSRTR GSCSEIGLAG KVQDNMRHHS GPFRVQLTKT  240
YTNRYVKFPR DFGNVKKHWK KGKGALLRVQ AREWKVSIAK SGRYFHLCTG WSSFVKENSL  300
KIGDECNFEV IDNNDDGIVL EVTMSRCPDK IE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-17B3 family protein