PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027169185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 384aa MW: 43785.8 Da PI: 8.0548 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.5 | 9.5e-38 | 122 | 277 | 4 | 133 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa.......secea 75 kdrhski T+ g+RdRR+Rls+++a++fFdLqd LGfdk+skt++WLl+q+ ai e+++ ss+s+ + XP_027169185.1 122 NKDRHSKINTAHGPRDRRMRLSLPVARKFFDLQDVLGFDKASKTVDWLLRQSSSAIEEIMRGlprmrhsrsvgantsvSSTSEgevvsgiE---- 212 79***********************************************************999887777666544331111121221111.... PP TCP 76 esssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +s++ k++++++k+ k +++a + la+esr+ ar+rar+rt ek ++ XP_027169185.1 213 ---------DSIRdtthdnqqanisvkmkaKSSSKKEKKAKLVRRTA-LHRLARESRKVARERARKRTIEKRKLG 277 .........11113333333455667776444444445555555555.899*******************98865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence |
MYPSSTNCTH NPIPFSWESV EHRPLFHSDI NPNSKFEDPL LTSLFHFASP CIYEDAVNEF 60 PWQQLDDTYL YQQQLSTAEN SLAEIVNHMA DPNSDPVHGL KQDWNKNGES TGEKVTRKRL 120 SNKDRHSKIN TAHGPRDRRM RLSLPVARKF FDLQDVLGFD KASKTVDWLL RQSSSAIEEI 180 MRGLPRMRHS RSVGANTSVS STSEGEVVSG IEDSIRDTTH DNQQANISVK MKAKSSSKKE 240 KKAKLVRRTA LHRLARESRK VARERARKRT IEKRKLGESR LCFAARDRES WGSFETDEGS 300 GTPAQKIHPS IEGLTEVEEL NPHERRLLET REYAAGEILL TTGNWNPSTI PVYQQNTEIS 360 NEHQFSDFQF CGKAWEAYDM SLGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-24 | TCP family protein |