PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027168373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26773.6 Da PI: 4.4845 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.1e-19 | 60 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g XP_027168373.1 60 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALSIKG 110 68*****998.**********843...6***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MSEPPSSCSS SLSSSSSSSS SSGSTQSNPS TELVKVSKEE EEEDRPRLKR QRDNSGNKHP 60 VYRGVRMRSW GKWVSEIREP RKKSRIWLGT YSTAEMAARA HDVAALSIKG NSAILNFPQL 120 VESLPRPVSL APRDVQAAAA KAAAMAELSS LCSSSSSSLS SSASDSISSP STTTMTTSSE 180 ELDEIIELPS LEESFDSSEL TLSDSVVDGW LFPPWWVSDA EFYGYLLGQA AVGDCELLKP 240 SSFGDIEMG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-50 | ERF family protein |