PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167212.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 297aa MW: 33129.9 Da PI: 5.4961

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	9.8e-39	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lapyfpa+qpk f+n+hklFG+sn+lk+l++l+++++ am+s++y++++r + Pv+G++g+i++l q++ +++el+ XP_027167212.1 10 ACAACKYQRRRCTADCPLAPYFPADQPKMFQNAHKLFGVSNILKILRELDPSQKLVAMKSIIYQSNIRDKYPVHGCLGIIQQLWYQIQLAEEELQ 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_027167212.1 105 AIHAQL 110 999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MTLKGGTSQA CAACKYQRRR CTADCPLAPY FPADQPKMFQ NAHKLFGVSN ILKILRELDP 60 SQKLVAMKSI IYQSNIRDKY PVHGCLGIIQ QLWYQIQLAE EELQAIHAQL ALYRQHQQQE 120 VSTGLSDSIS QLHLGMAPPS NALSHFHQDA PQNYDNTVSA LPIGSHPNYS SDSANAANYN 180 ATYMDSKENN AVNSLWVQQP PYNNSSSNIN NSNPMVMQSQ LINSQPLIIQ QDCGTQDYDE 240 MHPFFDTIDD RQSYIASKEA YESSSESSLK DTTQSVEHVA ENELKSAAVC FSLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-58	LBD family protein