PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027167205.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 31971.6 Da PI: 7.1339 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3e-18 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ XP_027167205.1 4 RGHWRPAEDEKLRELVEKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.5e-17 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+ell+ ++ +G++ W+ Iar ++ gRt++ +k++w+ XP_027167205.1 56 RSPFTEEEEELLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence |
MCSRGHWRPA EDEKLRELVE KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT 60 EEEEELLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSK MYAKRAAQAS 120 RTDQQKSESP KQDMQASSNQ IKCSFSPILF ENNYSQRLHQ YPLTFSTCSP YLKELLSQKH 180 IHDMNMSRDK DKNEPVEFYD FLQVNADSNR SEVIDNVARK EDEEVEQESI LEHDHQTKTG 240 VPFIDFFSAG GDQYSEIISE GCNYNHSEKV YY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-87 | MYB family protein |