PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027165364.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 282aa    MW: 32115.6 Da    PI: 5.2235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027165364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv  +++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_027165364.1 14 KGPWTPEEDQVLVSHIQKNGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.52.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_027165364.1  67 RGNFSKEEEDTIIKLHETLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MVRAPCCEKM GLKKGPWTPE EDQVLVSHIQ KNGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEDTIIK LHETLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKNHQ  120
ATSQDIKKQS TQVQRSDPRT PVTIDDQPDE SNFTDDHHHQ DGKVTTSLGC APVSPQHSSS  180
ELSTVTENDS AAIKQEKMDS PEYFPQIDES FWSEEFPVDN ANVQSEIHDG LATNDMQFQF  240
PLSPVAASDE DVNAYISNFD DGMDFWYDLF IRAGELPDLP EF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-85MYB family protein