PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027164748.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 595aa    MW: 67067.8 Da    PI: 6.4627
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027164748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2921.6e-892225931374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevs 88 
                     lv+ Ll+ Ae v ++++e+a +lL +  +l+s++g++++Rl+ yf  AL++r+ r++ ++     p+   +++s + l  ++         ++  
  XP_027164748.1 222 LVQYLLASAELVGKKQFERAGKLLLECDKLSSNQGNTIERLVYYFSGALHERIDRETGTVT----PKGLGKMQSLDMLDTMSGltpdiiaMQKSV 312
                     6899***************************************************443333....33333333333333331112233569**** PP

            GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                     P+ ++s+++  q Il+ v+ ++++Hi+D++i  G+Q+  L+qaLa+R+ ++   l++T++g    +sk ++eetg+rLa+fA++l+++f+ n+++
  XP_027164748.1 313 PFSQVSQFAGTQGILDHVADATKIHIVDLEIRTGMQYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRRLASFARALNLKFSLNIVM 404
                     ************************************************455569********...689*************************** PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     + ++ dl+ + +++  +Ea+aV + + l+ + +++  les    ++++vk ++P+v++v+e e +hns+ F++rf+eal +y a++dsle  l +
  XP_027164748.1 405 VADIMDLNENLFEIYADEAVAVWVEYYLMFMIRRQDILES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFHYGAFYDSLEDCLKH 495
                     *******************************977777777....*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                     +s++r++vE ++++++i+n+va+eg+er+ rh  ++ W++ + ++G+  v+ls + + qa+lll++++ +   ++  + + l++gWk+ p+ s+S
  XP_027164748.1 496 DSKNRMFVESVYFSQAIRNIVATEGEERTIRHVAVNVWKAFFARFGMVLVELSMSSMYQANLLLKNFDcGSSCTLAMDGKGLIIGWKGTPIHSLS 590
                     ********************************************************************9999*********************** PP

            GRAS 372 aWr 374
                     aW+
  XP_027164748.1 591 AWK 593
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    
MEMFHFDHFD FLGVSGKYGS TKGFQFEDHA KEEKRNHLIT NNVDEWEASR GIGSFYPGAP  60
GSNQVHCSTA DGVIFSKLHQ EQQLKQLSGF ACFNDLYFDM EIPPFQSCEE AIKKLVDDVA  120
FEGSEPNDAK KERPYAGSLQ ILKNYRKRFR KLNVEKTDFP SYLGCTFITS QKLSADAILK  180
LAAQNFIRSS SEGTSSEFFV LNHPYASSFV GLGEEDIKGV QLVQYLLASA ELVGKKQFER  240
AGKLLLECDK LSSNQGNTIE RLVYYFSGAL HERIDRETGT VTPKGLGKMQ SLDMLDTMSG  300
LTPDIIAMQK SVPFSQVSQF AGTQGILDHV ADATKIHIVD LEIRTGMQYT ILMQALATRS  360
QNPLEYLKVT AIGTKSKAKI EETGRRLASF ARALNLKFSL NIVMVADIMD LNENLFEIYA  420
DEAVAVWVEY YLMFMIRRQD ILESLMNVVK AINPRVMIVT EVEGNHNSPV FVTRFIEALF  480
HYGAFYDSLE DCLKHDSKNR MFVESVYFSQ AIRNIVATEG EERTIRHVAV NVWKAFFARF  540
GMVLVELSMS SMYQANLLLK NFDCGSSCTL AMDGKGLIIG WKGTPIHSLS AWKFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-58GRAS family protein