PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027164141.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 288aa    MW: 31746.3 Da    PI: 6.8482
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027164141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.4e-18205239135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C++ +Tp+WR gp g+ktLCnaCG++y++ +l
  XP_027164141.1 205 CLHCQADQTPQWRAGPMGPKTLCNACGVRYKSGRL 239
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MDALHNPDVA GAAAGCFMLD GEDDLLNFSL DDGEEEKENK NPSPFLKDPY SFSPSNTLIS  60
HQDDDLSRSP SFPEFEEELE WLSNKDAFPA VETCFDLLSE TPDFDGLNHQ SPVSVLENSS  120
SSSNSNGSNG SAVMSCCGNL KVPSSFPVRP RSQRRRRKRR SGFGDLPSQE WQWWNHVNIK  180
SNRQEVALPP VPVKANTSAT IGRRCLHCQA DQTPQWRAGP MGPKTLCNAC GVRYKSGRLV  240
PEYRPASSPT FSAALHSNSH RKIVEMRRQK QPGMGGIMAN GSCGYRVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRRRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-41GATA family protein