PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163297.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 375aa MW: 41890.8 Da PI: 4.8861

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.5	9.2e-20	134	184	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp r +r++lg+++taeeAa +++a+ +++g XP_027163297.1 134 KKYRGVRQRP-WGKWAAEIRDP---A-RkARIWLGTYDTAEEAAMVYDRAAIQIRG 184 59******.******8...2.35*********************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MDTDKLSRPL RKTVHRKILD NTAINMPRVV RIQFTDCDAT DSSGDDDDDG RLVSPVFRPP 60 RIKKLLSEIV IEKKKYSCPR KATFVDEVKN AVKDDLMKTK ATPKKKKRPL SNFINPNCCT 120 GSNSTAGEAV GNVKKYRGVR QRPWGKWAAE IRDPARKARI WLGTYDTAEE AAMVYDRAAI 180 QIRGPDALTN FIKPPEPERP DYTTTEEELA EVHATSVSGY DSGKESENNN LCSPTSVLRF 240 KDKHQPPQQN DQFKESSSTT RRITAASASA SATKWAGDWR PVEPVGAESE GISNSLDDDD 300 SLLLDQCLLN EFFNLKSPSP LIYNEIIGHD DGVLELEEGN FDDMPLDFGF GDDFGTSCGA 360 WDVNDFLEDH QLLLV

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MDTDKLSRPL RKTVHRKILD NTAINMPRVV RIQFTDCDAT DSSGDDDDDG RLVSPVFRPP  60
RIKKLLSEIV IEKKKYSCPR KATFVDEVKN AVKDDLMKTK ATPKKKKRPL SNFINPNCCT  120
GSNSTAGEAV GNVKKYRGVR QRPWGKWAAE IRDPARKARI WLGTYDTAEE AAMVYDRAAI  180
QIRGPDALTN FIKPPEPERP DYTTTEEELA EVHATSVSGY DSGKESENNN LCSPTSVLRF  240
KDKHQPPQQN DQFKESSSTT RRITAASASA SATKWAGDWR PVEPVGAESE GISNSLDDDD  300
SLLLDQCLLN EFFNLKSPSP LIYNEIIGHD DGVLELEEGN FDDMPLDFGF GDDFGTSCGA  360
WDVNDFLEDH QLLLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	PKKKKRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	3e-36	ERF family protein