PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162452.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 460aa MW: 51559.7 Da PI: 5.1819

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.4	4.7e-20	202	251	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdps r +r +lg+++taeeAa +++a+ kl+g XP_027162452.1 202 KFRGVRQRP-WGKWAAEIRDPS----RrARLWLGTYDTAEEAAMVYDNAAIKLRG 251 89*****.******84....34***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MCVGHFKAIF LYLHALYSSA FFFFTLPIDF PLLFYVVFNS NSRATATTLV RIQHSKVWGV 60 GEKRERKRKK MVDRGFLCPV KYTEHRSLTK KLALKPKKSS ERSSIVPRTV RISVTDPDAT 120 DSSSDEDELF GRQRVKRYIS EIKIETAAVC QQNSKNVISA SSNALAPHHH PKKKTAEALQ 180 AKQRPMKAKE PPVAAARGAV RKFRGVRQRP WGKWAAEIRD PSRRARLWLG TYDTAEEAAM 240 VYDNAAIKLR GPDALTNFIT PPAKEKPRVN VASTSCYESG EESHNLSSPT SVLRFRSSQS 300 SEEAEPECRS EGVEGPVPAD CTDEQTVQEE TDGEPWQEPV PEVAEECQGE TRHMIPDYSN 360 EYMPMDVPFL DNFFNFQSPE RITFDDTVPP SFSNDTFDLG LDVSFDDDVL PGLFADTAAA 420 SAGFGEFNDS FQDFGSVELN VDDYFQDMND FASADALLAV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MCVGHFKAIF LYLHALYSSA FFFFTLPIDF PLLFYVVFNS NSRATATTLV RIQHSKVWGV  60
GEKRERKRKK MVDRGFLCPV KYTEHRSLTK KLALKPKKSS ERSSIVPRTV RISVTDPDAT  120
DSSSDEDELF GRQRVKRYIS EIKIETAAVC QQNSKNVISA SSNALAPHHH PKKKTAEALQ  180
AKQRPMKAKE PPVAAARGAV RKFRGVRQRP WGKWAAEIRD PSRRARLWLG TYDTAEEAAM  240
VYDNAAIKLR GPDALTNFIT PPAKEKPRVN VASTSCYESG EESHNLSSPT SVLRFRSSQS  300
SEEAEPECRS EGVEGPVPAD CTDEQTVQEE TDGEPWQEPV PEVAEECQGE TRHMIPDYSN  360
EYMPMDVPFL DNFFNFQSPE RITFDDTVPP SFSNDTFDLG LDVSFDDDVL PGLFADTAAA  420
SAGFGEFNDS FQDFGSVELN VDDYFQDMND FASADALLAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	70	RKRKK
2	67	97	KRKKMVDRGFLCPVKYTEHRSLTKKLALKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	2e-64	ERF family protein