PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027162115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25470.4 Da PI: 6.5256 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 56 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+ +l+g XP_027162115.1 56 PVFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPSPEMAARAYDVAAYCLKG 106 579****887.**********843...6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MEMLLQQPPA PPCINEDDLA PSSSGSTTTA TTPTAAISRR SDTSSSSAAS GGTRHPVFRG 60 VRKRRWGKWV SEIREPRKKS RIWLGSFPSP EMAARAYDVA AYCLKGPKAQ LNFPDDIQLL 120 PRPLTTTARD IQAAASLAAR VAMAEGKKTT TMCGSSSTTA TTTAAHIGDD GSGSDDFWRD 180 IELPELIEAW PGENDNSTSV TVRRDYVWEL RYWSASSSLS SCSGMFSGDI ATSPME |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 8e-44 | ERF family protein |