PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027160096.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 313aa    MW: 35466.2 Da    PI: 6.0709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027160096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.8e-14651146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   XP_027160096.1  6 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 51
                     79*************************8887799**********87 PP
2Myb_DNA-binding46.77.2e-1562101344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+ + +d+ +q+G++ W++Ia +++ gRt++++k++w
   XP_027160096.1  62 KFSAEEERIVIDLQAQFGNK-WAKIATYLP-GRTDNDVKNFW 101
                      79******************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGEIKKGPWK AEEDEVLINH VKKYGPRDWS SIRSKGLLQR TGKSCRLRWV NKLRPNLKNG  60
VKFSAEEERI VIDLQAQFGN KWAKIATYLP GRTDNDVKNF WSSRQKRLAR ILQTPASSSS  120
SSSNRSQRNK HVPAIHDVPP FEASKFSSSS EEDSLPKSQS CLSLYTVKSL TVEMEMVPLP  180
ELMHPNTLNY EQSFLPPEFD LIEKKPCIET LSQLPFPQIP NFQSEFALSL ENNEVVTRLG  240
DPNYLEAFGS SISSELGNVQ LPIMPTCFES ERRSTQIAAK CEIGNPVTPD SFVDDFPIDI  300
FDHIEPLPSP LDW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.19e-82MYB family protein