PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027159712.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 355aa MW: 39001 Da PI: 4.3005

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027159712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.9	6.8e-20	80	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+fgta eAa a+++a+++++g XP_027159712.1 80 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGTAVEAALAYDEAARSMYG 130 56***999.******8...3.35**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MALLDQVSNV ASVPMDYSRK RKSRRRDGTN NVADTLAKWK EYNDKLDSLD EEGKVIRKVP 60 AKGSKKGCMK GKGGPENARC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FGTAVEAALA 120 YDEAARSMYG PCARLNLPNY GPQQEASIES SSFPATSASD STTTSGLSEV CPPADRDAEP 180 NSNVKEEDGE GESRIQDTRP LTWVDAGTPL CTVKEEPKDG HMEALDMSIQ AEAPVKNETF 240 NSSDEPLDTL VWDEMFDIDE MLSSLNSGPT HGSGSQYELV GINGGQFLNG NMQPSEFLYQ 300 MQSPDAKVLG SCQNMEQTSQ GVDYGFDFLE PGREENSQFA LDDLGFFDLD ADLGI

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MALLDQVSNV ASVPMDYSRK RKSRRRDGTN NVADTLAKWK EYNDKLDSLD EEGKVIRKVP  60
AKGSKKGCMK GKGGPENARC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FGTAVEAALA  120
YDEAARSMYG PCARLNLPNY GPQQEASIES SSFPATSASD STTTSGLSEV CPPADRDAEP  180
NSNVKEEDGE GESRIQDTRP LTWVDAGTPL CTVKEEPKDG HMEALDMSIQ AEAPVKNETF  240
NSSDEPLDTL VWDEMFDIDE MLSSLNSGPT HGSGSQYELV GINGGQFLNG NMQPSEFLYQ  300
MQSPDAKVLG SCQNMEQTSQ GVDYGFDFLE PGREENSQFA LDDLGFFDLD ADLGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	SRKRKS
2	19	27	RKRKSRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	1e-40	ERF family protein