PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027158769.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 540aa MW: 56927.5 Da PI: 7.2936

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027158769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.2	8.5e-40	143	252	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+ + + s +ss+s sa++ XP_027158769.1 143 PPKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANIStLNISVRSSGS-------TLSAPP 230 6799****************************************************************88855555555555.......333335 PP TCP 97 skksqksaasalnlakesraka 118 sk++++s +sal+la++ ++ XP_027158769.1 231 SKSAPHSFHSALALAHHPYEEG 252 5666666666666666554444 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MELTDLQQHQ TDKQTNTNTS STTTTSTTSQ SYHFSPFHLH HHHHHQQQQQ HARSAPFIAS 60 ISIPPAAALT SSVAGATSTT CAAAAGGNRT PSSASPSTPS TSASPSSAAV DASLAIATRS 120 ETLIDPSKKP PQQQQEAAQQ QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG 180 HKSDGETIEW LLQQAEPAII ASTGTGTIPA NISTLNISVR SSGSTLSAPP SKSAPHSFHS 240 ALALAHHPYE EGFSHMLGFQ QQQQHLLAAN QMTEAIPSGD GGGDSGGGGG QDATESYLRK 300 RYREDLFKEE GSSGRQGDGA DETSPSPPNK QFKVGGGGGG GGMQIPKTQD VGGPSSSMLR 360 HANMIPATAM WAVAPAPNSG GATGNAFWML PVTAGGSSQT ILAATSGGAV QQQPSEQQHH 420 HHQMWPFPSS SGNTLQAPLH FMPRFNIPAG NLETFQGGRA SPLQLGSMLM QQQQQQHPSQ 480 HLGLGMSESN LGMLAALNAY SRGVGNLNMN SDHQNHPMDH QQQHQPQPTD SGEDGPNSSQ

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MELTDLQQHQ TDKQTNTNTS STTTTSTTSQ SYHFSPFHLH HHHHHQQQQQ HARSAPFIAS  60
ISIPPAAALT SSVAGATSTT CAAAAGGNRT PSSASPSTPS TSASPSSAAV DASLAIATRS  120
ETLIDPSKKP PQQQQEAAQQ QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG  180
HKSDGETIEW LLQQAEPAII ASTGTGTIPA NISTLNISVR SSGSTLSAPP SKSAPHSFHS  240
ALALAHHPYE EGFSHMLGFQ QQQQHLLAAN QMTEAIPSGD GGGDSGGGGG QDATESYLRK  300
RYREDLFKEE GSSGRQGDGA DETSPSPPNK QFKVGGGGGG GGMQIPKTQD VGGPSSSMLR  360
HANMIPATAM WAVAPAPNSG GATGNAFWML PVTAGGSSQT ILAATSGGAV QQQPSEQQHH  420
HHQMWPFPSS SGNTLQAPLH FMPRFNIPAG NLETFQGGRA SPLQLGSMLM QQQQQQHPSQ  480
HLGLGMSESN LGMLAALNAY SRGVGNLNMN SDHQNHPMDH QQQHQPQPTD SGEDGPNSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-58	TCP family protein