PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027158373.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 376aa MW: 41840.5 Da PI: 4.7506

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027158373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.4e-11	297	342	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ r+RR++iN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq XP_027158373.1 297 HSLYARKRREKINERLRILQKLIPNG-----TKVDISTMLEEAVQYVKFLQ 342 66777*****************97.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MESFGAMGCG DWSSFNAIYS STTEEADFMV RLLGNISLPN DVPNSSNVKF SSTYWPASES 60 DVNKAVVQED SSINSSDDTS VDADVCYSFS QGSSFSGEGS SILCPLSQIY FCNSNSIISQ 120 PIVTRNDSSV CADYAMMECK NKMDSCDHEI IRINNILMEE GRDFLNQDVS SDCSMESGEN 180 DMPEAFSRGM ILQQGKDQHE INSLASEKSL EDESDNLLES SKKRPSTPLD VHKNKRMINA 240 KTNHQKLHPY DSKIAEGGHP VLCRQSSSSY LSEDDSNVSF NLHGKTRASR GSATDHHSLY 300 ARKRREKINE RLRILQKLIP NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA 360 YNGKNLGLDM DATLKS

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MESFGAMGCG DWSSFNAIYS STTEEADFMV RLLGNISLPN DVPNSSNVKF SSTYWPASES  60
DVNKAVVQED SSINSSDDTS VDADVCYSFS QGSSFSGEGS SILCPLSQIY FCNSNSIISQ  120
PIVTRNDSSV CADYAMMECK NKMDSCDHEI IRINNILMEE GRDFLNQDVS SDCSMESGEN  180
DMPEAFSRGM ILQQGKDQHE INSLASEKSL EDESDNLLES SKKRPSTPLD VHKNKRMINA  240
KTNHQKLHPY DSKIAEGGHP VLCRQSSSSY LSEDDSNVSF NLHGKTRASR GSATDHHSLY  300
ARKRREKINE RLRILQKLIP NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA  360
YNGKNLGLDM DATLKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	307	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	2e-51	bHLH family protein