PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027158023.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HRT-like

Protein Properties

Length: 394aa MW: 43933.4 Da PI: 9.9957

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027158023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	52.3	9.5e-17	126	156	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++G vCkr P++g+KRC eHKGm++ XP_027158023.1 126 ICGVALGHGVVCKRAPAEGNKRCSEHKGMKV 156 8****************************97 PP
2	HRT-like	52.6	7.5e-17	186	215	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvil+dGs+C+ +Pv+g+KRC eHKG++i XP_027158023.1 186 CGVILDDGSCCTSKPVQGNKRCLEHKGRKI 215 ***************************997 PP
3	HRT-like	56	6.8e-18	253	283	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dG++C+rqP RKRCeeHKG+Ri XP_027158023.1 253 ICGVDLDDGTFCTRQPPAARKRCEEHKGKRI 283 8*****************************7 PP
4	HRT-like	42.8	9e-14	329	354	2	27
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHK 27 CG+++ dGs+C+r+P +g+KRC++HK XP_027158023.1 329 CGAATHDGSFCSRKPTEGNKRCWQHK 354 ************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MRNFYLCFGF EQMKSTRDAD KTESDLLGKF DYAWNKGSNG PRRHNDILKM LDRISKTSPF 60 MAKLQVLSQK KKGIKIKAYK PPFVENGLDF YTSLETNGLL AQIFKFGRSQ PRLIVRSVIN 120 ENYISICGVA LGHGVVCKRA PAEGNKRCSE HKGMKVNGFT SKLLKDGKST LVANEYPINK 180 TFTPPCGVIL DDGSCCTSKP VQGNKRCLEH KGRKINNFPQ LVNDKKANYV YGPVLDYNTS 240 LSKAGHTDSS STICGVDLDD GTFCTRQPPA ARKRCEEHKG KRIKETISIS HRDEIPSSFI 300 HSGPKIGIQE SQNHSLIPSV FCDITSPACG AATHDGSFCS RKPTEGNKRC WQHKASSLNI 360 IYILGHHTYI LPLTYLHIHS SRTISAKRGS FRNI

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MRNFYLCFGF EQMKSTRDAD KTESDLLGKF DYAWNKGSNG PRRHNDILKM LDRISKTSPF  60
MAKLQVLSQK KKGIKIKAYK PPFVENGLDF YTSLETNGLL AQIFKFGRSQ PRLIVRSVIN  120
ENYISICGVA LGHGVVCKRA PAEGNKRCSE HKGMKVNGFT SKLLKDGKST LVANEYPINK  180
TFTPPCGVIL DDGSCCTSKP VQGNKRCLEH KGRKINNFPQ LVNDKKANYV YGPVLDYNTS  240
LSKAGHTDSS STICGVDLDD GTFCTRQPPA ARKRCEEHKG KRIKETISIS HRDEIPSSFI  300
HSGPKIGIQE SQNHSLIPSV FCDITSPACG AATHDGSFCS RKPTEGNKRC WQHKASSLNI  360
IYILGHHTYI LPLTYLHIHS SRTISAKRGS FRNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-38	HRT-like family protein