PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157640.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 424aa MW: 48798 Da PI: 9.6267

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.7	4.7e-21	150	243	1	86
trihelix 1 rWtkqevlaLiearr...emeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+++v++Li+a + e++ +++r ++ k+++W+++s++m +rg++++p qC++k+ +l+k+y+++++ +++ +++++++ ++ ++++ XP_027157640.1 150 KWTDDMVKLLITALSytgEDDVAVQRfrfvSCPKAGKWRAISNVMVQRGYHVTPHQCEDKFYDLSKKYRRLNDLLGRGtACKVVENPKLMNSMD 243 7************55522333333333578********************************************5599999999999996 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MSSFSLLHFL GRESGRLLIN LLSIRAAKGR EPVDRLYRLR FSSGRSLACA YVMPDKQLNM 60 QKQWLLKPVN GQQESYPSYD GFVFPPKFFL DMLPFGVQGP DKPLLLTEHN EGNKIDNFVG 120 TGEHLNVVQG SVNEIEGGGG VKETSHKRIK WTDDMVKLLI TALSYTGEDD VAVQRFRFVS 180 CPKAGKWRAI SNVMVQRGYH VTPHQCEDKF YDLSKKYRRL NDLLGRGTAC KVVENPKLMN 240 SMDLSNEVVA EVMKILSSKQ LFFKEMCSYY NGNRFFLPHD QSLQHLVKVA LKAKGKLSQY 300 VSHELPAKRM RELEDIGVSG FRSASDCNRK SAYHLSNKQT DPISLTNEGG EGDRSQDDWM 360 TSRLLHLEEQ KLQIQEQRLD LEKFLRDTQQ QDLKLEKMRL ENQVMRLENQ RLAVKLKYWK 420 RGPD

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MSSFSLLHFL GRESGRLLIN LLSIRAAKGR EPVDRLYRLR FSSGRSLACA YVMPDKQLNM  60
QKQWLLKPVN GQQESYPSYD GFVFPPKFFL DMLPFGVQGP DKPLLLTEHN EGNKIDNFVG  120
TGEHLNVVQG SVNEIEGGGG VKETSHKRIK WTDDMVKLLI TALSYTGEDD VAVQRFRFVS  180
CPKAGKWRAI SNVMVQRGYH VTPHQCEDKF YDLSKKYRRL NDLLGRGTAC KVVENPKLMN  240
SMDLSNEVVA EVMKILSSKQ LFFKEMCSYY NGNRFFLPHD QSLQHLVKVA LKAKGKLSQY  300
VSHELPAKRM RELEDIGVSG FRSASDCNRK SAYHLSNKQT DPISLTNEGG EGDRSQDDWM  360
TSRLLHLEEQ KLQIQEQRLD LEKFLRDTQQ QDLKLEKMRL ENQVMRLENQ RLAVKLKYWK  420
RGPD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-67	Trihelix family protein