PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027156275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 28202.1 Da PI: 4.8372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l +v ++G +W+ ++ g+ R++k+c++rw +yl XP_027156275.1 14 KGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE+ l++++++q+G++ W+tIa++++ Rt++++k++w+++l XP_027156275.1 67 RGKYTIEEEGLIIKLHEQYGNR-WSTIAAKLP-ARTDNDIKNHWHTHL 112 8999******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MVRAPSVDKN GMKKGAWSEE EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LKPGVRRGKY TIEEEGLIIK LHEQYGNRWS TIAAKLPART DNDIKNHWHT HLKKRYKESP 120 ICEGSQHIDD ADQNEQSSAM FTSGSSTDQK TEVDPTTSAA DSLDAYTDIS SLSCDSTLFD 180 GADWAADDSN SSVESLTEPL ESFWTEPFAL DTSFNNWLPS MEEEFMHPFS SFLDDSFDWF 240 HEFNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 4e-57 | MYB family protein |