PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027156162.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 750aa MW: 82411.3 Da PI: 4.5713

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027156162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.9e-06	257	276	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+ffa+ G+C G +C+F H XP_027156162.1 257 VCDFFAK-GWCIKGHSCRFLH 276 7****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MVAAATAKDP SSAETNSEAL SDEDIEYEEI EEEIEVEEEI EVEEEEEVEE EVEEEVEEEV 60 EEEVEEEVEE DVVGGGGDVK GEVDDDIDKE FGEELTPSNQ VNDQNDTGQV IEPDCNEDHF 120 IPGFATPGIS VANLLPDTHV VQGCAGDYRI SGSSVTTHNE EPHVDGKLFF MDHNNGASLC 180 DKWGRSGDST RLPVHELDAA ISHIDTESKK DNEDPYFEKG TYDISGKDSK GEAPRIRPRS 240 SSPESVLNDG NKRQAVVCDF FAKGWCIKGH SCRFLHIKGG AAITSHDKEG TVDAAAKKSE 300 LPDKKASSVQ LTPHGGESPN KRSETKELPL LKDDRLVLSS QDFGRPSSQD FGRQMNREEY 360 LGYGSSMAKG NSLHGTFSRS YARTLETYGS TIGTPHSTSL EEMTCTRSNF LATDHSFSSL 420 HRSPLSFAYP SWNTDSLSTQ KQLGSGQGDY ASRSASVQRS SSPFSGSESE NVSQTNAVND 480 KQCSAWSKTK TLYDWEPSVP FRPSFFMTRH LLSSASLYDP IRDSIEQASS VVGHSKISQS 540 GKEASVLGAH VQADADSFPT GTLGTECSSN KYSVLFSAKN FSSKDSTAEA KESVGTQSQN 600 KKSFLKEERF LENECVRDVM EADQMPIDCG SKSVSSGRHR TESKEEMSRQ MIEADADLKV 660 EESRALKNFH ASLVEVVKEL LKPSWHKGVL SKDAHKIIVK KAVEKVLSTL QPHQVPSTSE 720 SVKQYLSLSQ TKLAKLVEGY VDKYRKSSLG

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MVAAATAKDP SSAETNSEAL SDEDIEYEEI EEEIEVEEEI EVEEEEEVEE EVEEEVEEEV  60
EEEVEEEVEE DVVGGGGDVK GEVDDDIDKE FGEELTPSNQ VNDQNDTGQV IEPDCNEDHF  120
IPGFATPGIS VANLLPDTHV VQGCAGDYRI SGSSVTTHNE EPHVDGKLFF MDHNNGASLC  180
DKWGRSGDST RLPVHELDAA ISHIDTESKK DNEDPYFEKG TYDISGKDSK GEAPRIRPRS  240
SSPESVLNDG NKRQAVVCDF FAKGWCIKGH SCRFLHIKGG AAITSHDKEG TVDAAAKKSE  300
LPDKKASSVQ LTPHGGESPN KRSETKELPL LKDDRLVLSS QDFGRPSSQD FGRQMNREEY  360
LGYGSSMAKG NSLHGTFSRS YARTLETYGS TIGTPHSTSL EEMTCTRSNF LATDHSFSSL  420
HRSPLSFAYP SWNTDSLSTQ KQLGSGQGDY ASRSASVQRS SSPFSGSESE NVSQTNAVND  480
KQCSAWSKTK TLYDWEPSVP FRPSFFMTRH LLSSASLYDP IRDSIEQASS VVGHSKISQS  540
GKEASVLGAH VQADADSFPT GTLGTECSSN KYSVLFSAKN FSSKDSTAEA KESVGTQSQN  600
KKSFLKEERF LENECVRDVM EADQMPIDCG SKSVSSGRHR TESKEEMSRQ MIEADADLKV  660
EESRALKNFH ASLVEVVKEL LKPSWHKGVL SKDAHKIIVK KAVEKVLSTL QPHQVPSTSE  720
SVKQYLSLSQ TKLAKLVEGY VDKYRKSSLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-40	C3H family protein